Merge pull request #9 from beda-software/project-deps-upgrade #8
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| name: Static Code Analysis and Tests | |
| on: | |
| push: | |
| branches: ["main"] | |
| permissions: | |
| contents: read | |
| jobs: | |
| run-static-code-analysis: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install poetry | |
| poetry install | |
| - name: Run static code analysis with Ruff | |
| run: poetry run ruff check fhir_py_types/ tests/ | |
| - name: Run typecheck with Mypy | |
| run: poetry run mypy fhir_py_types/ tests/ | |
| run-unit-tests: | |
| runs-on: ubuntu-latest | |
| needs: [run-static-code-analysis] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install poetry | |
| poetry install | |
| - name: Test with pytest | |
| run: poetry run pytest tests/ | |
| run-spec-regression-tests: | |
| runs-on: ubuntu-latest | |
| needs: [run-unit-tests] | |
| strategy: | |
| matrix: | |
| spec_version: ["r4", "r5"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install poetry | |
| poetry install | |
| - name: Cache spec StructureDefinition bundle | |
| id: spec-download | |
| uses: actions/cache@v3 | |
| with: | |
| key: ${{ runner.os }}-spec-download-${{ hashFiles(format('./spec/{0}.bundle.checksumfile', matrix.spec_version)) }} | |
| path: | | |
| ./spec/fhir.types.json | |
| ./spec/fhir.resources.json | |
| - name: Download spec StructureDefinition bundle | |
| if: steps.spec-download.outputs.cache-hit != 'true' | |
| run: | | |
| cd ./spec/ | |
| bash download_spec_bundle.sh ${{ matrix.spec_version }} | |
| cd .. | |
| - name: Build resource models from the spec StructureDefinition bundle | |
| run: | | |
| poetry run typegen --from-bundles spec/fhir.types.json --from-bundles spec/fhir.resources.json --outfile generated/resources.py | |
| - name: Typecheck generated resource models | |
| run: poetry run mypy generated/resources.py | |
| run-synthea-models-regression-tests: | |
| runs-on: ubuntu-latest | |
| needs: [run-spec-regression-tests] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install poetry | |
| poetry install | |
| - name: Cache spec generated resource models | |
| id: spec-download | |
| uses: actions/cache@v3 | |
| with: | |
| key: ${{ runner.os }}-spec-generated-${{ hashFiles('./spec/r4.bundle.checksumfile') }} | |
| path: ./generated/resources.py | |
| - name: Download R4 spec and build resource models | |
| if: steps.spec-download.outputs.cache-hit != 'true' | |
| run: | | |
| cd ./spec/ | |
| bash download_spec_bundle.sh | |
| cd .. | |
| poetry run typegen --from-bundles spec/fhir.types.json --from-bundles spec/fhir.resources.json --outfile generated/resources.py | |
| - name: Cache Synthea samples | |
| id: synthea-samples-download | |
| uses: actions/cache@v3 | |
| with: | |
| key: ${{ runner.os }}-synthea-samples-download-${{ hashFiles('./regression/synthea/r4.bundle.checksumfile') }} | |
| path: ./regression/synthea/fhir/ | |
| - name: Download Synthea samples | |
| if: steps.synthea-samples-download.outputs.cache-hit != 'true' | |
| run: | | |
| cd ./regression/synthea/ | |
| bash download_sample_bundle.sh | |
| cd ../../ | |
| - name: Test Synthea samples can be parsed | |
| run: poetry run pytest regression/synthea/test_synthea_samples.py -vv |