Adding new/updated io.github.betaseg_cellsketch-analyze_0.2.0

betaseg · Dec 28, 2023 · 89237cd · 89237cd
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diff --git a/album_catalog_index.db b/album_catalog_index.db
diff --git a/solutions/io.github.betaseg/cellsketch-analyze/CHANGELOG.md b/solutions/io.github.betaseg/cellsketch-analyze/CHANGELOG.md
@@ -4,8 +4,9 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [0.2.0] - 2023-10-24
+## [0.2.0] - 2023-12-28
 Update CellSketch version
 
+
 ## [0.1.0] - 2023-07-04
 
diff --git a/solutions/io.github.betaseg/cellsketch-analyze/gradle/wrapper/gradle-wrapper.jar b/solutions/io.github.betaseg/cellsketch-analyze/gradle/wrapper/gradle-wrapper.jar
diff --git a/solutions/io.github.betaseg/cellsketch-analyze/gradle/wrapper/gradle-wrapper.properties b/solutions/io.github.betaseg/cellsketch-analyze/gradle/wrapper/gradle-wrapper.properties
diff --git a/solutions/io.github.betaseg/cellsketch-analyze/gradlew b/solutions/io.github.betaseg/cellsketch-analyze/gradlew
diff --git a/solutions/io.github.betaseg/cellsketch-analyze/gradlew.bat b/solutions/io.github.betaseg/cellsketch-analyze/gradlew.bat
diff --git a/solutions/io.github.betaseg/cellsketch-analyze/solution.py b/solutions/io.github.betaseg/cellsketch-analyze/solution.py
@@ -167,10 +167,10 @@ def is_file_arg(arg_name):
     description="This solution performs spatial analysis for all organelles in a CellSketch project.",
     tags=["bdv", "cellsketch", "segmentation", "annotation", "analysis"],
     cite=[{
-        "text": "A. Müller, D. Schmidt, C. S. Xu, S. Pang, J. V. D’Costa, S. Kretschmar, C. Münster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D FIB-SEM reconstruction of microtubule–organelle interaction in whole primary mouse β cells. J Cell Biol 1 February 2021; 220 (2): e202010039.",
+        "text": "A. Müller, D. Schmidt, C. S. Xu, S. Pang, J. V. D'Costa, S. Kretschmar, C. Münster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D FIB-SEM reconstruction of microtubule-organelle interaction in whole primary mouse β cells. J Cell Biol 1 February 2021; 220 (2): e202010039.",
         "doi": "https://doi.org/10.1083/jcb.202010039"
     }, {
-        "text": "Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomancak, P. (2015). BigDataViewer: visualization and processing for large image data sets. Nature Methods, 12(6), 481–483.",
+        "text": "Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomancak, P. (2015). BigDataViewer: visualization and processing for large image data sets. Nature Methods, 12(6), 481-483.",
         "doi": "10.1038/nmeth.3392"
     }, {
         "text": "Pape, C. (2019). constantinpape/z5",

diff --git a/solutions/io.github.betaseg/cellsketch-analyze/solution.yml b/solutions/io.github.betaseg/cellsketch-analyze/solution.yml
@@ -4,7 +4,7 @@ args:
   name: project
   required: true
   type: directory
-- description: "Max distance between two connected organelles in \u03BCm."
+- description: "Max distance between two connected organelles in \xCE\xBCm."
   name: connected_threshold_in_um
   required: true
   type: float
@@ -16,17 +16,19 @@ args:
   description: Threads to use to calculate the distance transform maps.
   name: num_threads
   type: integer
-changelog: Update CellSketch version
+changelog: 'Update CellSketch version
+
+  '
 cite:
 - doi: https://doi.org/10.1083/jcb.202010039
-  text: "A. M\xFCller, D. Schmidt, C. S. Xu, S. Pang, J. V. D\u2019Costa, S. Kretschmar,\
-    \ C. M\xFCnster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D FIB-SEM\
-    \ reconstruction of microtubule\u2013organelle interaction in whole primary mouse\
-    \ \u03B2 cells. J Cell Biol 1 February 2021; 220 (2): e202010039."
+  text: "A. M\xC3\xBCller, D. Schmidt, C. S. Xu, S. Pang, J. V. D'Costa, S. Kretschmar,\
+    \ C. M\xC3\xBCnster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D\
+    \ FIB-SEM reconstruction of microtubule-organelle interaction in whole primary\
+    \ mouse \xCE\xB2 cells. J Cell Biol 1 February 2021; 220 (2): e202010039."
 - doi: 10.1038/nmeth.3392
-  text: "Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomancak, P. (2015). BigDataViewer:\
-    \ visualization and processing for large image data sets. Nature Methods, 12(6),\
-    \ 481\u2013483."
+  text: 'Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomancak, P. (2015). BigDataViewer:
+    visualization and processing for large image data sets. Nature Methods, 12(6),
+    481-483.'
 - doi: 10.5281/ZENODO.3585752
   text: Pape, C. (2019). constantinpape/z5
 covers:
@@ -44,6 +46,6 @@ tags:
 - segmentation
 - annotation
 - analysis
-timestamp: '2023-10-24T01:07:21.848419'
+timestamp: '2023-12-28T20:32:57.560824'
 title: 'CellSketch: Run spatial analysis'
 version: 0.2.0
diff --git a/solutions/io.github.betaseg/cellsketch-analyze/src/main/java/Main.java b/solutions/io.github.betaseg/cellsketch-analyze/src/main/java/Main.java