Adding new/updated io.github.betaseg_cellsketch-analyze_0.2.1

solutions/io.github.betaseg/cellsketch-analyze/CHANGELOG.md

@@ -4,6 +4,9 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.2.1] - 2024-03-06
+Fix executable issue with gradlew
+
 ## [0.2.0] - 2023-12-28
 Update CellSketch version
 

solutions/io.github.betaseg/cellsketch-analyze/solution.py

@@ -15,17 +15,19 @@ def install():
     shutil.copytree(get_package_path().joinpath('src'), get_app_path().joinpath('src'))
     shutil.copytree(get_package_path().joinpath('gradle'), get_app_path().joinpath('gradle'))
 
-    # compile app
     subprocess.run([(get_gradle_executable()), 'build', '-Dorg.gradle.internal.http.socketTimeout=300000'],
                    cwd=get_app_path(), check=True)
 
 
 def get_gradle_executable():
     from sys import platform
+    import os
     from album.runner.api import get_app_path
     if platform == "win32":
-        return get_app_path().joinpath('gradlew.bat')
-    return get_app_path().joinpath('gradlew')
+        return str(get_app_path().joinpath('gradlew.bat').absolute())
+    gradle_executable = str(get_app_path().joinpath('gradlew').absolute())
+    os.chmod(gradle_executable, 0o755)
+    return gradle_executable
 
 
 def run():
@@ -161,7 +163,7 @@ def is_file_arg(arg_name):
 setup(
     group="io.github.betaseg",
     name="cellsketch-analyze",
-    version="0.2.0",
+    version="0.2.1",
     solution_creators=["Deborah Schmidt"],
     title="CellSketch: Run spatial analysis",
     description="This solution performs spatial analysis for all organelles in a CellSketch project.",

solutions/io.github.betaseg/cellsketch-analyze/solution.yml

@@ -4,7 +4,7 @@ args:
   name: project
   required: true
   type: directory
-- description: "Max distance between two connected organelles in \xCE\xBCm."
+- description: "Max distance between two connected organelles in \u03BCm."
   name: connected_threshold_in_um
   required: true
   type: float
@@ -16,15 +16,13 @@ args:
   description: Threads to use to calculate the distance transform maps.
   name: num_threads
   type: integer
-changelog: 'Update CellSketch version
-
-  '
+changelog: Fix executable issue with gradlew
 cite:
 - doi: https://doi.org/10.1083/jcb.202010039
-  text: "A. M\xC3\xBCller, D. Schmidt, C. S. Xu, S. Pang, J. V. D'Costa, S. Kretschmar,\
-    \ C. M\xC3\xBCnster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D\
-    \ FIB-SEM reconstruction of microtubule-organelle interaction in whole primary\
-    \ mouse \xCE\xB2 cells. J Cell Biol 1 February 2021; 220 (2): e202010039."
+  text: "A. M\xFCller, D. Schmidt, C. S. Xu, S. Pang, J. V. D'Costa, S. Kretschmar,\
+    \ C. M\xFCnster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D FIB-SEM\
+    \ reconstruction of microtubule-organelle interaction in whole primary mouse \u03B2\
+    \ cells. J Cell Biol 1 February 2021; 220 (2): e202010039."
 - doi: 10.1038/nmeth.3392
   text: 'Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomancak, P. (2015). BigDataViewer:
     visualization and processing for large image data sets. Nature Methods, 12(6),
@@ -46,6 +44,6 @@ tags:
 - segmentation
 - annotation
 - analysis
-timestamp: '2023-12-28T20:32:57.560824'
+timestamp: '2024-03-06T21:38:59.563153'
 title: 'CellSketch: Run spatial analysis'
-version: 0.2.0
+version: 0.2.1