Merge pull request #38 from betteridiot/fix_nnocoord

Fixing style errors.
betteridiot · Aug 9, 2019 · 4f86bb6 · 4f86bb6
2 parents cfacc9b + 9188963
commit 4f86bb6
Showing 1 changed file with 11 additions and 5 deletions.
diff --git a/bamnostic/bam.py b/bamnostic/bam.py
@@ -327,15 +327,21 @@ def _init_index(self):
         """Initialize the index file (BAI)"""
 
         if self._check_idx:
-            #self._index = bamnostic.bai.Bai(self._index_path)
-            if self._index_ext == 'csi':
+            # self._index = bamnostic.bai.Bai(self._index_path)
+            if self._index_ext == "csi":
                 self._index = csi.Csi(self._index_path)
-            elif self._index_ext == 'bai':
+            elif self._index_ext == "bai":
                 self._index = bai.Bai(self._index_path)
 
             self.__nocoordinate = self._index.n_no_coor
-            self.__mapped = sum(self._index.unmapped[mapped].n_mapped for mapped in self._index.unmapped) + (self.nocoordinate if self.nocoordinate is not None else 0)
-            self.__unmapped = sum(self._index.unmapped[unmapped].n_unmapped for unmapped in self._index.unmapped) + (self.nocoordinate if self.nocoordinate is not None else 0)
+            self.__mapped = sum(
+                self._index.unmapped[mapped].n_mapped
+                for mapped in self._index.unmapped
+            ) + (self.nocoordinate if self.nocoordinate is not None else 0)
+            self.__unmapped = sum(
+                self._index.unmapped[unmapped].n_unmapped
+                for unmapped in self._index.unmapped
+            ) + (self.nocoordinate if self.nocoordinate is not None else 0)
 
     @property
     def nocoordinate(self):