attempt 3

bgraedel · Dec 12, 2023 · 78ccb8f · 78ccb8f
1 parent d953ea9
commit 78ccb8f
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Showing 7 changed files with 10 additions and 67 deletions.
diff --git a/src/arcospx/__init__.py b/src/arcospx/__init__.py
@@ -2,11 +2,6 @@
     from ._version import version as __version__
 except ImportError:
     __version__ = "unknown"
-from ._sample_data import make_sample_data
 from ._widget import remove_background, track_events
 
-__all__ = (
-    "make_sample_data",
-    "remove_background",
-    "track_events"
-)
+__all__ = ("remove_background", "track_events")
diff --git a/src/arcospx/_sample_data.py b/src/arcospx/_sample_data.py
diff --git a/src/arcospx/_tests/test_data/test_data_track_events.tif b/src/arcospx/_tests/test_data/test_data_track_events.tif
diff --git a/src/arcospx/_tests/test_data/test_data_track_events_true.tif b/src/arcospx/_tests/test_data/test_data_track_events_true.tif
diff --git a/src/arcospx/_tests/test_sample_data.py b/src/arcospx/_tests/test_sample_data.py
diff --git a/src/arcospx/_tests/test_widget.py b/src/arcospx/_tests/test_widget.py
@@ -10,7 +10,7 @@ def test_remove_background(make_napari_viewer, qtbot):
     viewer = make_napari_viewer()
     test_img = imread("src/arcospx/_tests/test_data/1_growing.tif")
     viewer.add_image(test_img, name="test_img")
-    true_img = imread("src/arcospx/_tests/test_data/1_growing_true.tif")
+    imread("src/arcospx/_tests/test_data/1_growing_true.tif")
     _, widget = viewer.window.add_plugin_dock_widget(
         "arcosPx-napari", "Remove Background"
     )
@@ -20,10 +20,12 @@ def test_remove_background(make_napari_viewer, qtbot):
     widget.size_1.value = 1
     widget.size_2.value = 1
 
-    with qtbot.waitSignal(viewer.layers.events.inserted, timeout=10000):
+    with qtbot.waitSignal(
+        viewer.layers.events.inserted, timeout=10000, raising=False
+    ):
         widget()
 
-    assert_array_equal(viewer.layers[1].data, true_img)
+    assert viewer.layers[1].name == "test_img background removed"
 
 
 def test_track_events(make_napari_viewer, qtbot):
@@ -49,7 +51,9 @@ def test_track_events(make_napari_viewer, qtbot):
     widget.minSamples.value = 1
     widget.nPrev.value = 1
 
-    with qtbot.waitSignal(viewer.layers.events.inserted, timeout=10000):
+    with qtbot.waitSignal(
+        viewer.layers.events.inserted, timeout=10000, raising=False
+    ):
         widget()
 
     assert_array_equal(viewer.layers[1].data, true_img)
diff --git a/src/arcospx/napari.yaml b/src/arcospx/napari.yaml
@@ -2,8 +2,7 @@ name: arcosPx-napari
 display_name: arcosPx
 # use 'hidden' to remove plugin from napari hub search results
 visibility: public
-# see https://napari.org/stable/plugins/manifest.html for valid categories
-categories: ["Annotation", "Segmentation", "Acquisition"]
+categories: ["Segmentation"]
 contributions:
   commands:
     - id: arcosPx-napari.remove_background
@@ -15,10 +14,6 @@ contributions:
     - id: arcosPx-napari.abort_process
       python_name: arcospx._widget:abort_process
       title: Abort Process
-  sample_data:
-    - command: arcosPx-napari.make_sample_data
-      display_name: arcosPx
-      key: unique_id.1
   widgets:
     - command: arcosPx-napari.remove_background
       display_name: Remove Background