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Former-commit-id: f43b45e
bhklab · Jun 6, 2022 · 06b82e9 · 06b82e9
1 parent 030c229
commit 06b82e9
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diff --git a/imgtools/io/dataset.py b/imgtools/io/dataset.py
@@ -47,7 +47,7 @@ def load_from_nrrd(
 
         for col in df_metadata.columns:
             if col.startswith("folder"):
-                df_metadata[col] = df_metadata[col].apply(lambda x: pathlib.Path(os.path.split(os.path.dirname(path))[0], x).as_posix()) #input folder joined with the rel path
+                df_metadata[col] = df_metadata[col].apply(lambda x: pathlib.Path(os.path.split(os.path.dirname(path))[0], x).as_posix() if isinstance(x, str) else x) #input folder joined with the rel path
 
         output_streams = [("_").join(cols.split("_")[1:]) for cols in df_metadata.columns if cols.split("_")[0] == "folder"]
         imp_metadata = [cols for cols in df_metadata.columns if cols.split("_")[0] in ("metadata")]

diff --git a/imgtools/io/loaders.py b/imgtools/io/loaders.py
@@ -148,6 +148,7 @@ def read_dicom_pet(path,series=None):
 def read_dicom_auto(path, series=None):
     if path is None:
         return None
+    print(path)
     dcms = glob.glob(pathlib.Path(path, "*.dcm").as_posix())
     meta = dcmread(dcms[0])
     modality = meta.Modality