.imgtools directory

bhklab · May 24, 2022 · 455c027 · 455c027
1 parent 9a8ff65
commit 455c027
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/imgtools/ops/ops.py b/imgtools/ops/ops.py
@@ -84,7 +84,7 @@ def __init__(self,
         ####### CRAWLER ############
         # Checks if dataset has already been indexed
         # To be changed later
-        path_crawl = os.path.join(self.parent, f"imgtools_{self.dataset_name}.csv")
+        path_crawl = os.path.join(self.parent, ".imgtools", f"imgtools_{self.dataset_name}.csv")
         if not os.path.exists(path_crawl):
             print("Couldn't find the dataset index CSV. Indexing the dataset...")
             db = crawl(self.dir_path, n_jobs=n_jobs)
@@ -94,7 +94,7 @@ def __init__(self,
 
         ####### GRAPH ##########
         # Form the graph
-        edge_path = os.path.join(self.parent,f"imgtools_{self.dataset_name}_edges.csv")
+        edge_path = os.path.join(self.parent,".imgtools",f"imgtools_{self.dataset_name}_edges.csv")
         graph = DataGraph(path_crawl=path_crawl, edge_path=edge_path, visualize=visualize)
         print(f"Forming the graph based on the given modalities: {self.modalities}")
         self.df_combined = graph.parser(self.modalities)

diff --git a/imgtools/utils/crawl.py b/imgtools/utils/crawl.py
@@ -116,7 +116,7 @@ def crawl(top,
     # save one level above imaging folders
     parent, dataset  = os.path.split(top)
 
-    parent_imgtools = os.path.join(parent, "imgtools")
+    parent_imgtools = os.path.join(parent, ".imgtools")
 
     if not os.path.exists(parent_imgtools):
         os.makedirs(parent_imgtools)