funky NaN problem

Former-commit-id: 7e96504
bhklab · May 31, 2022 · f36e203 · f36e203
1 parent f7e3987
commit f36e203
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Showing 2 changed files with 7 additions and 3 deletions.
diff --git a/examples/autotest.py b/examples/autotest.py
@@ -156,7 +156,11 @@ def process_one_subject(self, subject_id):
                 # save output
                 print(mask.GetSize())
                 mask_arr = np.transpose(sitk.GetArrayFromImage(mask))
-                sparse_mask = mask.generate_sparse_mask()
+
+
+                # sparse_mask = mask.generate_sparse_mask()
+
+
                 # np.set_printoptions(threshold=sys.maxsize)
                 # print(sparse_mask.mask_array.shape)
                 # print(sparse_mask.mask_array[350:360,290:300,93])

diff --git a/imgtools/modules/datagraph.py b/imgtools/modules/datagraph.py
@@ -280,8 +280,8 @@ def parser(self, query_string: str) -> pd.DataFrame:
         #change relative paths to absolute paths
         for col in final_df.columns:
             if col.startswith("folder"):
-                print(self.edge_path, os.path.dirname(self.edge_path))
-                final_df[col] = final_df[col].apply(lambda x: pathlib.Path(os.path.split(os.path.dirname(self.edge_path))[0], x).as_posix()) #input folder joined with the rel path
+                # print(self.edge_path, os.path.dirname(self.edge_path))
+                final_df[col] = final_df[col].apply(lambda x: pathlib.Path(os.path.split(os.path.dirname(self.edge_path))[0], x).as_posix() if isinstance(x, str) else x) #input folder joined with the rel path
         return final_df
 
     def graph_query(self,