Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Skim2257 quick fix #26

Merged
merged 2 commits into from
Apr 26, 2022
Merged

Skim2257 quick fix #26

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
c08b3db
Updated crawler to force String on all meta fields
skim2257 Apr 26, 2022
61539e0
Update setup.py
skim2257 Apr 26, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 5 additions & 5 deletions imgtools/utils/crawl.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -18,10 +18,10 @@ def crawl_one(folder):
# instance (slice) information
for dcm in dicoms:
meta = dcmread(dcm)
patient = meta.PatientID
study = meta.StudyInstanceUID
series = meta.SeriesInstanceUID
instance = meta.SOPInstanceUID
patient = str(meta.PatientID)
study = str(meta.StudyInstanceUID)
series = str(meta.SeriesInstanceUID)
instance = str(meta.SOPInstanceUID)

reference_ct, reference_rs, reference_pl = " ", " ", " "
try: #RTSTRUCT
Expand Down Expand Up @@ -136,4 +136,4 @@ def crawl(top,

args = parser.parse_args()
db = crawl(args.directory, n_jobs=args.n_jobs)
print("# patients:", len(db))
print("# patients:", len(db))
2 changes: 1 addition & 1 deletion setup.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@

setup(
name="med-imagetools",
version="0.2.2",
version="0.2.3",
author="Michal Kazmierski, Sejin Kim, Vishwesh Ramanathan, Benjamin Haibe-Kains",
author_email="benjamin.haibe.kains@utoronto.ca",
description="Transparent and reproducible image processing pipelines in Python.",
Expand Down