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Nnunet demo #40

Merged
merged 489 commits into from
Jul 6, 2022
Merged

Nnunet demo #40

merged 489 commits into from
Jul 6, 2022

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fishingguy456
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merge some bugfixes

Vishwesh4 and others added 30 commits December 8, 2021 11:34
…into add_capabilities

merging sejin's addition


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…into add_capabilities

merging sejin's addition


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…into add_capabilities

merging sejin's addition
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* Added test autopipeline and modalities, solved some autopipeline bugs, read_dicom_series and pet now supports series_id

* PT/RTDOSE metadata to csv

* fixed some bugs in autopipeline.py

* now the pipeline saves on exit

* deleted data

* now checks for existing subject id

* uncommented one line pytest

* uncommented one line pytest

Co-authored-by: Vishwesh <vishweshramanathan@gmail.com>
Former-commit-id: f2480c3
* Added test autopipeline and modalities, solved some autopipeline bugs, read_dicom_series and pet now supports series_id

* PT/RTDOSE metadata to csv

* fixed some bugs in autopipeline.py

* now the pipeline saves on exit

* deleted data

* now checks for existing subject id

* uncommented one line pytest

* uncommented one line pytest

Co-authored-by: Vishwesh <vishweshramanathan@gmail.com>
…taset and convert to pytorch dataset

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…taset and convert to pytorch dataset

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@skim2257 skim2257 merged commit 31cecbe into master Jul 6, 2022
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3 participants