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@github-actions github-actions released this 29 May 16:16
· 24 commits to main since this release
v1.1.0
fe25ff2

v1.1.0 (2024-05-29)

Chore

Feature

  • feat: semantic release (#114)

  • feat: semantic release

  • fix: if statement issue (23a2d70)

Fix

  • fix: add codecov badge (f43d042)

  • fix: explicit module to track for code coverage (f15d45d)

Unknown

  • Dev (#112)

  • kill bob the builder

  • pip publish without semantic release

  • oops

  • adding checkout to pip-squeak

  • fixed main.yml

  • fixed main.yml

  • fixed main.yml

  • skip autopipeline in pip testing

  • adding code coverage

  • removed pytest-xdist

  • xdist removed, -n flag gone

  • fix: explicit module to track for code coverage

  • chore: bump version

  • removed pytest-xdist

  • xdist removed, -n flag gone

  • fixing main.yml conflict

Co-authored-by: Jermiah Joseph <jermiahjoseph98@gmail.com> (76cea29)

  • Dev (#111)

  • kill bob the builder

  • pip publish without semantic release

  • oops

  • adding checkout to pip-squeak

  • fixed main.yml

  • fixed main.yml

  • fixed main.yml

  • skip autopipeline in pip testing

  • adding code coverage

  • removed pytest-xdist

  • xdist removed, -n flag gone (48fcfd0)

  • skip autopipeline in pip testing (054d1b4)

  • fixed main.yml (b5b09e7)

  • fixed main.yml (560272f)

  • fixed main.yml (535a1c5)

  • adding checkout to pip-squeak (da6e006)

  • oops (8291564)

  • pip publish without semantic release (5e3cc39)

  • kill bob the builder (5eacc0f)

  • Substantial refactoring, linting, CI/CD updates (#107)

  • Switching to poetry + ruff

  • fixed main.yml

  • this will do

  • maybe this?

  • update lock

  • fix: ruff errors

  • fix: python version error

  • all lint checks pass

  • tests should work...

  • update pytest version

  • new poetry install

  • windows ghaction poetry install... work pls

  • yml fix

  • poetry version=1.8.2

  • still fixing main.yml

  • maybe it's poetry?

  • oh boy!

  • kill old unit test ci/cd

  • update ci/cd badge

Co-authored-by: Jermiah Joseph <jermiahjoseph98@gmail.com> (6ddc645)

  • New tests, improving code coverage. (#105)

  • new_tests_in_progress

  • Added majority coverage for imgtools.ops.

  • updated main-ci.yml with dataset-check.py name change. (c2e8ddb)

  • Mit lite (#104)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio

  • added missing dep in main-ci

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • updated PyPI push with API key

  • build-pkg pls work

  • pypi changes

  • no egg please

  • hm

  • remove dataset dependency. to be reconciled later

  • 1.2.0.1 hopefully fixed

  • main-ci removed test_dataset

  • readding scikit-learn

  • push to 1.2.0.2 (9137965)

  • Mit lite (#103)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio

  • added missing dep in main-ci

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • updated PyPI push with API key

  • build-pkg pls work

  • pypi changes

  • no egg please

  • hm

  • remove dataset dependency. to be reconciled later

  • 1.2.0.1 hopefully fixed

  • main-ci removed test_dataset

  • readding scikit-learn (4b06915)

  • MIT lite (#102)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio

  • added missing dep in main-ci

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • updated PyPI push with API key

  • build-pkg pls work

  • pypi changes

  • no egg please

  • hm

  • remove dataset dependency. to be reconciled later

  • 1.2.0.1 hopefully fixed

  • main-ci removed test_dataset (535bff0)

  • Mit lite (#101)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio

  • added missing dep in main-ci

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • updated PyPI push with API key

  • build-pkg pls work

  • pypi changes

  • no egg please

  • hm (e378eea)

  • Mit lite (#100)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio

  • added missing dep in main-ci

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • updated PyPI push with API key

  • build-pkg pls work

  • pypi changes

  • no egg please (3df6f2c)

  • Mit lite (#99)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio

  • added missing dep in main-ci

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • updated PyPI push with API key

  • build-pkg pls work

  • pypi changes (92da301)

  • Mit lite (#98)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio

  • added missing dep in main-ci

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • updated PyPI push with API key

  • build-pkg pls work (7dfca09)

  • Mit lite (#97)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio

  • added missing dep in main-ci

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • updated PyPI push with API key (07dad6c)

  • Mit lite (#96)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request

  • added torch and torchio (afea698)

  • Detached branch (#94) (#95)

  • Detached branch (#94)

  • v1.2.0 for lighter install.

  • update main-ci.yml

  • fixed test_dataset

  • added zipfile and request (88857bf)

  • updated actions to new default branch. 'master' branch is DEPRECATED (d10b5ba)

  • updated version and default branch to 'main' (8784b5f)

  • Flake8 linting fixes (#93)

  • add stop_before_pixels tag and set to True to speed up dcm reads

  • add ct-seg support

  • flake8 linting fixes

  • flake8 linting fixes transforms

Co-authored-by: Umar Yousafzai <umaryousafzai54@gmail.com> (43a72fe)

  • convert to dicom (#89)

nifti to dicom function (ba50037)

  • test break during demo (#81)

  • test break during demo

  • Update setup.py to 1.1.6 (1268cbc)

  • add stop_before_pixels tag and set to True to speed up dcm reads (#80)

AYE AYE (bb4dad7)

  • Dicom seg (#78)

  • DICOM-SEG beta commit

  • dicom-seg update

  • some changes

  • utils for refactoring

  • add attr to reqs

  • fixed attr to attrs

  • update version (d99950f)

  • Dicom seg (#77)

  • DICOM-SEG beta commit

  • dicom-seg update

  • some changes

  • utils for refactoring

  • add attr to reqs

  • fixed attr to attrs (7634a6c)

  • DICOM-SEG beta commit (#74) (5c4924d)

  • Add docstrings to Segmentation init (#73) (223f0b6)

  • Add raw roi columns (#72)

  • Change roi_names to roi_indices

  • Add raw_roi_names

  • Add raw_roi_names (6327578)

  • update version (52c3a8d)

  • Add mr crawls (#71)

  • added 5 MR tags: RepetitionTime, EchoTime, ScanSequence, MagneticFieldStrength, ImagedNucleus

  • added SEGMENTATION ReferencedSeriesSequence as ref_ct

  • change pytest version

  • pytest 6.2.2

  • whoops

  • testing nibabel

  • importlib test

  • iniconfig test

  • sitk 2.2.0 test

  • snumpy21.23test

  • numpy 1.23 test

  • changed deprecated numpy np.int to int

  • deprecated np.warnings

  • fixed problematic autopipeline:612 (37e5d8e)

  • updated version to 1.1.0

  • MR/SEG dicom tags added to crawler
  • 1.1 subversions will add support for mri sorting, segmentation files, and multi-acquisition series (8a95ae7)

  • added 5 MR tags: RepetitionTime, EchoTime, ScanSequence, MagneticFiel… (#70)

  • added 5 MR tags: RepetitionTime, EchoTime, ScanSequence, MagneticFieldStrength, ImagedNucleus

  • added SEGMENTATION ReferencedSeriesSequence as ref_ct

  • change pytest version (8f81e40)

  • Delete the labels that are empty (#69) (1e25c57)

  • Autopipeline fix (#68)

  • Added default value for path strings

  • Changed is_nnunet for nnunet (9b19076)

  • Update setup.py (b3314d4)

  • hotfix (#67) (f3151a1)

  • Crawl orientation (#66)

  • added orientation DICOM tag crawling

  • nnunet flags hotfix (#64)

  • autopipeline.py:164, changed or -> and

  • added orientation DICOM tag crawling

  • more is_nnunet fails (ffd6bca)

  • added orientation DICOM tag crawling (#65) (cc9cea1)

  • autopipeline.py:164, changed or -> and (f41f18d)

  • nnunet flags hotfix (#64) (ecc6939)

  • New flags: --update, --roi_select_first, --roi_separate, better mask_label parsing (#45)

  • added --update flag, needs test.

  • Added --roi_select_first and --roi_separate flags for advanced ROI parsing for contours.

  • mask_label parsing for illegal Windows/Unix characters (Issue #45 resolved) (89b715b)

  • Update README.md (199071e)

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