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Reorganize rec, ce entities, defacemask
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emdupre authored and sappelhoff committed Aug 8, 2020
1 parent aa98a2d commit 18893a6
Showing 1 changed file with 12 additions and 12 deletions.
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Expand Up @@ -138,6 +138,13 @@ modalities include:
| Inplane T2 | inplaneT2 | T2-weighted anatomical image matched to functional acquisition |
| Angiography | angio | |

If the structural images included in the dataset were defaced (to protect
identity of participants) one CAN provide the binary mask that was used to
remove facial features in the form of `_defacemask` files. In such cases the
OPTIONAL `mod-<label>` key/value pair corresponds to modality label for eg: T1w,
inplaneT1, referenced by a defacemask image. E.g.,
`sub-01_mod-T1w_defacemask.nii.gz`.

#### The `run` entity

If several scans of the same modality are acquired they MUST be indexed with a
Expand Down Expand Up @@ -168,18 +175,6 @@ sequences using different contrast enhanced images. The label is the name of the
contrast agent. The key `ContrastBolusIngredient` MAY be also be added in the
JSON file, with the same label.

#### The `rec` entity

Similarly the OPTIONAL `rec-<label>` key/value can be used to distinguish
different reconstruction algorithms (for example ones using motion correction).

If the structural images included in the dataset were defaced (to protect
identity of participants) one CAN provide the binary mask that was used to
remove facial features in the form of `_defacemask` files. In such cases the
OPTIONAL `mod-<label>` key/value pair corresponds to modality label for eg: T1w,
inplaneT1, referenced by a defacemask image. E.g.,
`sub-01_mod-T1w_defacemask.nii.gz`.

Some meta information about the acquisition MAY be provided in an additional
JSON file. See [Common metadata fields](#common-metadata-fields) for a
list of terms and their definitions. There are also some OPTIONAL JSON
Expand All @@ -189,6 +184,11 @@ fields specific to anatomical scans:
| -----------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------- |
| ContrastBolusIngredient | OPTIONAL. Active ingredient of agent. Values MUST be one of: IODINE, GADOLINIUM, CARBON DIOXIDE, BARIUM, XENON Corresponds to DICOM Tag 0018,1048. |

#### The `rec` entity

Similarly the OPTIONAL `rec-<label>` key/value can be used to distinguish
different reconstruction algorithms (for example ones using motion correction).

### Task (including resting state) imaging data

Currently supported image contrasts include:
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