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Merge pull request #77 from franklin-feingold/old_contrib
Added appendix to mkdocs and added some internal links
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1 Changelog <a id="h.17phlwhk50et"></a> | ||
=============== | ||
1 Changelog | ||
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1.1.1 | ||
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- Improved the MEG landmark coordinates description. | ||
- Replaced ManufacturersCapModelName in meg.json with CapManufacturer | ||
and CapManufacturersModelName. | ||
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- Replaced ManufacturersCapModelName in meg.json with CapManufacturer and | ||
CapManufacturersModelName. | ||
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- Remove EEGSamplingFrequency and ManufacturersAmplifierModelName | ||
from the meg.json. | ||
from the meg.json. | ||
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- Improved the behavioural data description. | ||
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1.1.0 | ||
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- Added support for MEG data (merged BEP008) | ||
- Added SequenceName field. | ||
- Added support for describing events with Hierarchical Event Descriptors [[8.5 Task events](#heading=h.daip42kp5ndz)]. | ||
- Added VolumeTiming and AcquisitionDuration fields [[8.4 Task (including resting state) imaging data](#heading=h.r8mrcau3kkcq)]. | ||
- Added DwellTime field. | ||
- Added support for MEG data (merged BEP008) | ||
- Added SequenceName field. | ||
- Added support for describing events with Hierarchical Event Descriptors [[4.3 Task events](src/04-modality-specific-files/03-task-events.md)]. | ||
- Added VolumeTiming and AcquisitionDuration fields [[4.1 Task (including resting state) imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)]. | ||
- Added DwellTime field. | ||
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1.0.2 | ||
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- Added support for high resolution (anatomical) T2star images [[8.3 Anatomy imaging data](#heading=h.fm6ipijipc08)]. | ||
- Added support for multiple defacing masks [[8.3 Anatomy imaging data](#heading=h.fm6ipijipc08)]. | ||
- Added optional key and metadata field for contrast enhanced structural scans [[8.3 Anatomy imaging data](#heading=h.fm6ipijipc08)]. | ||
- Added DelayTime field [[8.4 Task (including resting state) imaging data](#heading=h.r8mrcau3kkcq)]. | ||
- Added support for multi echo BOLD data [[8.4 Task (including resting state) imaging data](#heading=h.r8mrcau3kkcq)]. | ||
- Added support for high resolution (anatomical) T2star images [[4.1 Anatomy imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)]. | ||
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- Added support for multiple defacing masks [[4.1 Anatomy imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)]. | ||
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- Added optional key and metadata field for contrast enhanced structural scans | ||
[[4.1 Anatomy imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)] | ||
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- Added DelayTime field [[4.1 Task (including resting state) imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)]. | ||
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- Added support for multi echo BOLD data [[4.1 Task (including resting state) imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)]. | ||
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1.0.1 | ||
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- Added InstitutionName field [[8.4 Task (including resting state) imaging data](#heading=h.r8mrcau3kkcq)]. | ||
- Added InstitutionAddress field [[8.4 Task (including resting state) imaging data](#heading=h.r8mrcau3kkcq)]. | ||
- Added DeviceSerialNumber field [[8.4 Task (including resting state) imaging data](#heading=h.r8mrcau3kkcq)]. | ||
- Added InstitutionName field [[4.1 Task (including resting state) imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)]. | ||
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- Added InstitutionAddress field [[4.1 Task (including resting state) imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)]. | ||
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- Added DeviceSerialNumber field [[4.1 Task (including resting state) imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)]. | ||
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- Added NumberOfVolumesDiscardedByUser and | ||
NumberOfVolumesDiscardedByScanner field [[8.4 Task (including | ||
resting state) imaging data](#heading=h.r8mrcau3kkcq)]. | ||
NumberOfVolumesDiscardedByScanner field [[4.1 Task (including | ||
resting state) imaging data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)]. | ||
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- Added TotalReadoutTime to functional images metadata list | ||
[[8.4 Task (including resting state) imaging | ||
data](#heading=h.r8mrcau3kkcq)]. | ||
[[4.1 Task (including resting state) imaging | ||
data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)]. | ||
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1.0.1-rc1 | ||
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- Added T1 Rho maps [[8.3 Anatomy imaging | ||
data](#heading=h.fm6ipijipc08)]. | ||
- Added T1 Rho maps [[4.1 Anatomy imaging | ||
data](src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)]. | ||
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- Added support for phenotypic information split into multiple files | ||
[[8.11 Participant key file](#heading=h.pi5iigxxt8vy)]. | ||
[[3.2 Participant key file](src/03-modality-agnostic-files.md#participants-file)]. | ||
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- Added recommendations for multi site datasets | ||
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- Added SoftwareVersions | ||
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- Added run-<run_index> to the phase encoding | ||
maps. Improved the description. | ||
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- Added InversionTime metadata key. | ||
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- Clarification on the source vs raw language. | ||
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- Added trial_type column to the event files. | ||
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- Added missing sub-<participant_label> in | ||
behavioural data file names | ||
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- Added ability to store stimuli files. | ||
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- Clarified the language describing allowed subject labels. | ||
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- Added quantitative proton density maps. | ||
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1.0.0 | ||
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- Added ability to specify fieldmaps acquired with multiple parameter | ||
sets. | ||
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- Added ability to have multiple runs of the same fieldmap. | ||
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- Added FLASH anatomical images. | ||
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1.0.0-rc4 | ||
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- Replaced links to neurolex with explicit DICOM Tags. | ||
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- Added sourcedata. | ||
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- Added data dictionaries. | ||
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- Be more explicit about contents of JSON files for structural | ||
(anatomical) scans. | ||
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1.0.0-rc3 | ||
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- Renamed PhaseEncodingDirection values from “x”, “y”, | ||
“z” to “i”, “j”, “k” to avoid confusion with FSL parameters | ||
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- Renamed SliceEncodingDirection values from “x”, “y”, | ||
“z” to “i”, “j”, “k” | ||
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1.0.0-rc2 | ||
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- Removed the requirement that TSV files cannot include more than two | ||
consecutive spaces. | ||
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- Refactor of the definitions sections (copied from the | ||
manuscript) | ||
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- Make support for uncompressed .nii files more explicit. | ||
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- Added BIDSVersion to dataset.json | ||
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- Remove the statement that SliceEncodingDirection is | ||
necessary for slice time correction | ||
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- Change dicom converter recommendation from dcmstack to dcm2nii and | ||
dicm2nii following interactions with the community (see | ||
[https://github.com/moloney/dcmstack/issues/39](https://github.com/moloney/dcmstack/issues/39) and | ||
[https://github.com/neurolabusc/dcm2niix/issues/4](https://github.com/neurolabusc/dcm2niix/issues/4)). | ||
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- Added section on behavioral experiments with no accompanying MRI | ||
acquisition | ||
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- Add \_magnitude.nii\[.gz\] image for GE type | ||
fieldmaps. | ||
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- Replaced EchoTimeDifference with | ||
EchoTime1 and EchoTime2 (SPM toolbox | ||
requires this input). | ||
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- Added support for single band reference image for DWI. | ||
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- Added DatasetDOI field in the dataset | ||
description. | ||
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- Added description of more metadata fields relevant to DWI fieldmap | ||
correction. | ||
- PhaseEncodingDirection is now expressed in “x”, “y” etc. | ||
instead of “PA” “RL” for DWI scans (so it’s the same as BOLD | ||
scans) | ||
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- PhaseEncodingDirection is now expressed in “x”, “y” etc. instead of “PA” | ||
“RL” for DWI scans | ||
(so it’s the same as BOLD scans) | ||
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- Added rec-<label> flag to BOLD files to | ||
distinguish between different reconstruction algorithms (analogous | ||
to anatomical scans). | ||
- Added recommendation to use \_physio suffix for continuous recordings of motion parameters obtained by the scanner side reconstruction algorithms. | ||
distinguish | ||
between different reconstruction algorithms | ||
(analogous to anatomical scans). | ||
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- Added recommendation to use \_physio suffix for continuous recordings | ||
of motion | ||
parameters obtained by | ||
the scanner side reconstruction algorithms. | ||
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1.0.0-rc1 | ||
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- Initial release | ||
- Initial release |
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