[DOC] Auto-generate changelog entry for PR #513

bids-standard · Jul 4, 2020 · ed022a7 · ed022a7
1 parent 43c44cd
commit ed022a7
Showing 1 changed file with 48 additions and 119 deletions.
diff --git a/src/CHANGES.md b/src/CHANGES.md
@@ -2,7 +2,13 @@
 
 ## [Unreleased](https://github.com/bids-standard/bids-specification/tree/HEAD)
 
+-   \[INFRA] add copyright holder to license.  [#521](https://github.com/bids-standard/bids-specification/pull/521) ([sappelhoff](https://github.com/sappelhoff))
+-   \[ENH] Update `beh/` specification to contrast with any neural recordings [#515](https://github.com/bids-standard/bids-specification/pull/515) ([effigies](https://github.com/effigies))
 -   \[Fix] 'segmentation' spelling in 05-derivatives/03-imaging.md [#514](https://github.com/bids-standard/bids-specification/pull/514) ([rwblair](https://github.com/rwblair))
+-   \[FIX] restructure and clarify \*\_physio/\*\_stim section [#513](https://github.com/bids-standard/bids-specification/pull/513) ([sappelhoff](https://github.com/sappelhoff))
+-   \[FIX] clarify file formats in EEG, iEEG [#511](https://github.com/bids-standard/bids-specification/pull/511) ([sappelhoff](https://github.com/sappelhoff))
+-   \[Fix] Add links and release dates to pre GH changelog, fix formatting [#509](https://github.com/bids-standard/bids-specification/pull/509) ([sappelhoff](https://github.com/sappelhoff))
+-   \[INFRA] make circle artifact link a GH action, point to pdf [#505](https://github.com/bids-standard/bids-specification/pull/505) ([sappelhoff](https://github.com/sappelhoff))
 -   \[FIX] Typos in DECISION-MAKING file [#504](https://github.com/bids-standard/bids-specification/pull/504) ([tsalo](https://github.com/tsalo))
 -   \[ENH] Add `Commenting on a PR` to CONTRIBUTING.md [#490](https://github.com/bids-standard/bids-specification/pull/490) ([franklin-feingold](https://github.com/franklin-feingold))
 -   \[FIX] clarify MEG empty-room recording naming conventions [#480](https://github.com/bids-standard/bids-specification/pull/480) ([sappelhoff](https://github.com/sappelhoff))
@@ -238,164 +244,87 @@
 -   Adding code of conduct [#6](https://github.com/bids-standard/bids-specification/pull/6) ([chrisgorgo](https://github.com/chrisgorgo))
 -   Renaming the main document [#1](https://github.com/bids-standard/bids-specification/pull/1) ([chrisgorgo](https://github.com/chrisgorgo))
 
-## 1.1.1
+## [1.1.1](https://doi.org/10.5281/zenodo.3759805) (2018-06-06)
 
 -   Improved the MEG landmark coordinates description.
-
--   Replaced ManufacturersCapModelName in meg.json with CapManufacturer and
-    CapManufacturersModelName.
-
--   Remove EEGSamplingFrequency and ManufacturersAmplifierModelName
-    from the meg.json.
-
+-   Replaced `ManufacturersCapModelName` in `meg.json` with `CapManufacturer` and `CapManufacturersModelName`.
+-   Remove `EEGSamplingFrequency` and `ManufacturersAmplifierModelName` from the `meg.json.`
 -   Improved the behavioral data description.
 
-## 1.1.0
+## [1.1.0](https://doi.org/10.5281/zenodo.3759802) (2018-04-19)
 
 -   Added support for MEG data (merged BEP008)
--   Added SequenceName field.
+-   Added `SequenceName` field.
 -   Added support for describing events with Hierarchical Event Descriptors \[[4.3 Task events](04-modality-specific-files/05-task-events.md)].
--   Added VolumeTiming and AcquisitionDuration fields \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
--   Added DwellTime field.
+-   Added `VolumeTiming` and `AcquisitionDuration` fields \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
+-   Added `DwellTime` field.
 
-## 1.0.2
+## [1.0.2](https://doi.org/10.5281/zenodo.3759801) (2017-07-18)
 
 -   Added support for high resolution (anatomical) T2star images \[[4.1 Anatomy imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)].
-
 -   Added support for multiple defacing masks \[[4.1 Anatomy imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)].
-
--   Added optional key and metadata field for contrast enhanced structural scans
-    \[[4.1 Anatomy imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)]
-
--   Added DelayTime field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
-
+-   Added optional key and metadata field for contrast enhanced structural scans \[[4.1 Anatomy imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)]
+-   Added `DelayTime` field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
 -   Added support for multi echo BOLD data \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
 
-## 1.0.1
-
--   Added InstitutionName field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
-
--   Added InstitutionAddress field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
-
--   Added DeviceSerialNumber field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
-
--   Added NumberOfVolumesDiscardedByUser and
-    NumberOfVolumesDiscardedByScanner field \[[4.1 Task (including
-    resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
+## [1.0.1](https://doi.org/10.5281/zenodo.3759788) (2017-03-13)
 
--   Added TotalReadoutTime to functional images metadata list
-     \[[4.1 Task (including resting state) imaging
-    data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
+-   Added `InstitutionName` field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
+-   Added `InstitutionAddress` field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
+-   Added `DeviceSerialNumber` field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
+-   Added `NumberOfVolumesDiscardedByUser` and `NumberOfVolumesDiscardedByScanner` field \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
+-   Added `TotalReadoutTime to` functional images metadata list \[[4.1 Task (including resting state) imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#task-including-resting-state-imaging-data)].
 
 ## 1.0.1-rc1
 
--   Added T1 Rho maps \[[4.1 Anatomy imaging
-    data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)].
-
--   Added support for phenotypic information split into multiple files
-    \[[3.2 Participant key file](03-modality-agnostic-files.md#participants-file)].
-
+-   Added T1 Rho maps \[[4.1 Anatomy imaging data](04-modality-specific-files/01-magnetic-resonance-imaging-data.md#anatomy-imaging-data)].
+-   Added support for phenotypic information split into multiple files \[[3.2 Participant key file](03-modality-agnostic-files.md#participants-file)].
 -   Added recommendations for multi site datasets
-
--   Added SoftwareVersions
-
--   Added run-&lt;run_index> to the phase encoding
-    maps. Improved the description.
-
--   Added InversionTime metadata key.
-
+-   Added `SoftwareVersions`
+-   Added `run-<run_index>` to the phase encoding maps. Improved the description.
+-   Added `InversionTime` metadata key.
 -   Clarification on the source vs raw language.
-
--   Added trial_type column to the event files.
-
--   Added missing sub-&lt;participant_label> in
-    behavioral data file names
-
+-   Added `trial_type` column to the event files.
+-   Added missing `sub-<participant_label>` in behavioral data file names
 -   Added ability to store stimuli files.
-
 -   Clarified the language describing allowed subject labels.
-
 -   Added quantitative proton density maps.
 
-## 1.0.0
-
--   Added ability to specify fieldmaps acquired with multiple parameter
-    sets.
+## [1.0.0](https://doi.org/10.5281/zenodo.3686062) (2016-06-23)
 
+-   Added ability to specify fieldmaps acquired with multiple parameter sets.
 -   Added ability to have multiple runs of the same fieldmap.
-
 -   Added FLASH anatomical images.
 
 ## 1.0.0-rc4
 
 -   Replaced links to neurolex with explicit DICOM Tags.
-
 -   Added sourcedata.
-
 -   Added data dictionaries.
-
--   Be more explicit about contents of JSON files for structural
-    (anatomical) scans.
+-   Be more explicit about contents of JSON files for structural (anatomical) scans.
 
 ## 1.0.0-rc3
 
--   Renamed PhaseEncodingDirection values from “x”, “y”,
-    “z” to “i”, “j”, “k” to avoid confusion with FSL parameters
-
--   Renamed SliceEncodingDirection values from “x”, “y”,
-    “z” to “i”, “j”, “k”
+-   Renamed `PhaseEncodingDirection` values from "x", "y", "z" to "i", "j", "k" to avoid confusion with FSL parameters
+-   Renamed `SliceEncodingDirection` values from "x", "y", "z" to "i", "j", "k"
 
 ## 1.0.0-rc2
 
--   Removed the requirement that TSV files cannot include more than two
-    consecutive spaces.
-
--   Refactor of the definitions sections (copied from the
-    manuscript)
-
--   Make support for uncompressed .nii files more explicit.
-
--   Added BIDSVersion to dataset.json
-
--   Remove the statement that SliceEncodingDirection is
-    necessary for slice time correction
-
--   Change dicom converter recommendation from dcmstack to dcm2nii and
-    dicm2nii following interactions with the community (see
-    <https://github.com/moloney/dcmstack/issues/39> and
-    <https://github.com/neurolabusc/dcm2niix/issues/4>).
-
--   Added section on behavioral experiments with no accompanying MRI
-    acquisition
-
--   Add \_magnitude.nii\[.gz] image for GE type
-    fieldmaps.
-
--   Replaced EchoTimeDifference with
-    EchoTime1 and EchoTime2 (SPM toolbox
-    requires this input).
-
+-   Removed the requirement that TSV files cannot include more than two consecutive spaces.
+-   Refactor of the definitions sections (copied from the manuscript)
+-   Make support for uncompressed `.nii` files more explicit.
+-   Added `BIDSVersion` to `dataset.json`
+-   Remove the statement that `SliceEncodingDirection` is necessary for slice time correction
+-   Change dicom converter recommendation from dcmstack to dcm2nii and dicm2nii following interactions with the community (see <https://github.com/moloney/dcmstack/issues/39> and <https://github.com/neurolabusc/dcm2niix/issues/4>).
+-   Added section on behavioral experiments with no accompanying MRI acquisition
+-   Add `_magnitude.nii[.gz]` image for GE type fieldmaps.
+-   Replaced EchoTimeDifference with EchoTime1 and EchoTime2 (SPM toolbox requires this input).
 -   Added support for single band reference image for DWI.
-
--   Added DatasetDOI field in the dataset
-    description.
-
--   Added description of more metadata fields relevant to DWI fieldmap
-    correction.
-
--   PhaseEncodingDirection is now expressed in “x”, “y” etc. instead of “PA”
-    “RL” for DWI scans
-    (so it’s the same as BOLD scans)
-
--   Added rec-&lt;label> flag to BOLD files to
-    distinguish
-    between different reconstruction algorithms
-    (analogous to anatomical scans).
-
--   Added recommendation to use \_physio suffix for continuous recordings
-    of motion
-    parameters obtained by
-    the scanner side reconstruction algorithms.
+-   Added DatasetDOI field in the dataset description.
+-   Added description of more metadata fields relevant to DWI fieldmap correction.
+-   PhaseEncodingDirection is now expressed in "x", "y" etc. instead of "PA" "RL" for DWI scans (so it's the same as BOLD scans)
+-   Added `rec-<label>` flag to BOLD files to distinguish between different reconstruction algorithms (analogous to anatomical scans).
+-   Added recommendation to use `_physio` suffix for continuous recordings of motion parameters obtained by the scanner side reconstruction algorithms.
 
 ## 1.0.0-rc1