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[FIX] harmonize and thus shorten templates etc #93

Merged
merged 14 commits into from
Nov 28, 2018

Commits on Nov 20, 2018

  1. RF: use lowercase optional instead of OPTIONAL

    IMHO there is not need to capitalize it in the text.  Moreover it was
    inconsistent - some places had it capitalized and some not
    yarikoptic committed Nov 20, 2018
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  2. [DATALAD RUNCMD] No need for session_ prefix in ses-<session_label> -…

    …- implied
    
    === Do not change lines below ===
    {
     "chain": [],
     "cmd": "git-sedi 'ses-<session_label>' 'ses-<label>'",
     "exit": 0,
     "inputs": [],
     "outputs": [],
     "pwd": "."
    }
    ^^^ Do not change lines above ^^^
    yarikoptic committed Nov 20, 2018
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  3. [DATALAD RUNCMD] No need for participant_ prefix in sub-<participant_…

    …label> -- implied (and inconsistent)
    
    === Do not change lines below ===
    {
     "chain": [],
     "cmd": "git-sedi 'sub-<participant_label>' 'sub-<label>'",
     "exit": 0,
     "inputs": [],
     "outputs": [],
     "pwd": "."
    }
    ^^^ Do not change lines above ^^^
    yarikoptic committed Nov 20, 2018
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  4. [DATALAD RUNCMD] No need for task_ prefix in task-<task_label> -- imp…

    …lied
    
    === Do not change lines below ===
    {
     "chain": [],
     "cmd": "git-sedi 'task-<task_label>' 'task-<label>'",
     "exit": 0,
     "inputs": [],
     "outputs": [],
     "pwd": "."
    }
    ^^^ Do not change lines above ^^^
    yarikoptic committed Nov 20, 2018
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  5. [DATALAD RUNCMD] No need for run_ prefix in run-<run_index> -- implied

    === Do not change lines below ===
    {
     "chain": [],
     "cmd": "git-sedi 'run-<run_index>' 'run-<index>'",
     "exit": 0,
     "inputs": [],
     "outputs": [],
     "pwd": "."
    }
    ^^^ Do not change lines above ^^^
    yarikoptic committed Nov 20, 2018
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  6. [DATALAD RUNCMD] No need for dir_ prefix in dir-<dir_label> -- implied

    === Do not change lines below ===
    {
     "chain": [],
     "cmd": "git-sedi 'dir-<dir_label>' 'dir-<label>'",
     "exit": 0,
     "inputs": [],
     "outputs": [],
     "pwd": "."
    }
    ^^^ Do not change lines above ^^^
    yarikoptic committed Nov 20, 2018
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  7. Configuration menu
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Commits on Nov 25, 2018

  1. Merge remote-tracking branch 'origin/master' into rf-harmonize

    * origin/master:
      Change BEP numbers to include MRS
      ENH: allow _dir for other EPI (func, dwi) sequences
    
    Conflicts:
        src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md
           as promised -- was conflicting with my changes in other PR.  Tuned it
           all up so there is no dir_label now
    yarikoptic committed Nov 25, 2018
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Commits on Nov 27, 2018

  1. Revert "RF: use lowercase optional instead of OPTIONAL"

    This reverts commit 375c040.
    yarikoptic committed Nov 27, 2018
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  2. Configuration menu
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  3. Configuration menu
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  4. Configuration menu
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  5. BF: fixed table formatting

    yarikoptic committed Nov 27, 2018
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Commits on Nov 28, 2018

  1. Merge remote-tracking branch 'origin/master' into rf-harmonize

    * origin/master:
      adding extensions page
      simplify options wrt sparse sequences
      fix table fence
      check table legend
      check table legend
      hopefully last fix to list in volume timing table legend
      additional fix to list in table legend
      wrapping long lines
      BF: fix the stale anchor left from google doc, also add reference at other points
      BF: fixed a url (https -> http)
      change table legend to list
      Fixes long line
      Fixes misaligned table fence 2
      Fixes misaligned table fence
      Fixes misalignement and use of square bracket
      add table for volume timing
      highligh some fields as code, probably missed during the clean up after import from google doc
    yarikoptic committed Nov 28, 2018
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