Commits on Jan 14, 2016

1. [ADAM-916] New strategy for writing header. …

   Resolves bigdatagenomics#916. Makes several modifications that should eliminate the header
   attach issue when writing back to SAM/BAM:
   
   * Writes the SAM/BAM header as a single file.
   * Instead of trying to attach the SAM/BAM header to the output format via a
     singleton object, we pass the path to the SAM/BAM header file via the Hadoop
     configuration.
   * The output format reads the header from HDFS when creating the record writer.
   * At the end, once we've written the full RDD and the header file, we merge all
     via Hadoop's FsUtil.

   

   fnothaft committed Jan 14, 2016
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