Mango python #307

akmorrow13 · 2017-08-21T18:57:16Z

TODOs:

Change naming from mango to bdg_mango after PR moved bdgenomics.adam package to bdgenomics-adam adam#1705 is merged
Get pip for ADAM up to be referenced by Mango

AmplabJenkins · 2017-08-21T19:01:43Z

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coveralls · 2017-08-21T19:08:02Z

Coverage decreased (-72.9%) to 0.0% when pulling b77485e on akmorrow13:mango-python into 337171e on bigdatagenomics:master.

AmplabJenkins · 2017-08-21T19:08:07Z

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AmplabJenkins · 2017-08-22T04:56:05Z

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coveralls · 2017-08-22T16:49:17Z

Coverage increased (+0.7%) to 73.578% when pulling 300c2fb on akmorrow13:mango-python into 337171e on bigdatagenomics:master.

AmplabJenkins · 2017-08-22T16:52:06Z

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coveralls · 2017-08-22T17:39:21Z

Coverage increased (+0.7%) to 73.578% when pulling d3bf239 on akmorrow13:mango-python into 337171e on bigdatagenomics:master.

AmplabJenkins · 2017-08-22T17:44:29Z

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coveralls · 2017-08-24T00:44:06Z

Coverage increased (+0.7%) to 73.578% when pulling 985c7cd on akmorrow13:mango-python into 337171e on bigdatagenomics:master.

AmplabJenkins · 2017-08-24T00:49:09Z

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coveralls · 2017-08-24T19:54:54Z

Coverage increased (+0.7%) to 73.578% when pulling 5acfbaf on akmorrow13:mango-python into 9e087fc on bigdatagenomics:master.

AmplabJenkins · 2017-08-24T20:00:53Z

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coveralls · 2017-08-24T21:54:01Z

Coverage increased (+0.7%) to 73.578% when pulling a73322d on akmorrow13:mango-python into 9e087fc on bigdatagenomics:master.

AmplabJenkins · 2017-08-24T21:59:53Z

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AmplabJenkins · 2017-08-24T22:45:16Z

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AmplabJenkins · 2017-08-24T22:45:39Z

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akmorrow13 · 2017-08-24T22:47:40Z

Jenkins, retest this please.

coveralls · 2017-08-24T22:54:03Z

Coverage increased (+0.7%) to 73.578% when pulling 9ca3d4b on akmorrow13:mango-python into 9e087fc on bigdatagenomics:master.

AmplabJenkins · 2017-08-24T23:03:59Z

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coveralls · 2017-08-25T04:09:02Z

Coverage increased (+0.7%) to 73.578% when pulling a17609f on akmorrow13:mango-python into 9e087fc on bigdatagenomics:master.

AmplabJenkins · 2017-08-25T04:17:49Z

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akmorrow13 · 2017-08-25T04:29:20Z

Jenkins, retest this please.

coveralls · 2017-08-25T04:33:50Z

Coverage increased (+0.7%) to 73.578% when pulling a17609f on akmorrow13:mango-python into 9e087fc on bigdatagenomics:master.

AmplabJenkins · 2017-08-25T04:42:25Z

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coveralls · 2017-08-25T05:24:19Z

Coverage increased (+0.7%) to 73.578% when pulling 7792639 on akmorrow13:mango-python into 9e087fc on bigdatagenomics:master.

AmplabJenkins · 2017-08-25T05:26:27Z

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akmorrow13 · 2017-08-25T05:27:19Z

Jenkins, retest this please.

coveralls · 2017-08-25T05:33:50Z

Coverage increased (+0.7%) to 73.578% when pulling 7792639 on akmorrow13:mango-python into 9e087fc on bigdatagenomics:master.

AmplabJenkins · 2017-09-21T18:34:50Z

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AmplabJenkins · 2017-09-21T22:05:06Z

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akmorrow13 · 2017-09-21T22:20:56Z

Jenkins, retest this please.

AmplabJenkins · 2017-09-21T22:35:55Z

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AmplabJenkins · 2017-09-22T03:10:16Z

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akmorrow13 · 2017-09-22T04:14:53Z

Jenkins, retest this please.

AmplabJenkins · 2017-09-22T04:29:42Z

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AmplabJenkins · 2017-09-22T04:43:27Z

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akmorrow13 · 2017-09-22T04:44:15Z

Jenkins, retest this please.

AmplabJenkins · 2017-09-22T04:54:54Z

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AmplabJenkins · 2017-09-25T20:00:34Z

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akmorrow13 · 2017-09-25T20:02:41Z

Jenkins, retest this please.

AmplabJenkins · 2017-09-25T20:15:38Z

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adding python

updated mango-python to build and run with spark 2

AmplabJenkins · 2017-09-25T20:41:37Z

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akmorrow13 · 2017-09-25T20:42:35Z

Jenkins, retest this please.

AmplabJenkins · 2017-09-25T20:54:33Z

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akmorrow13 mentioned this pull request Aug 23, 2017

Include bdgenomics.adam-0.23.0_SNAPSHOT-py2.7.egg in distribution tarball bigdatagenomics/adam#1667

Closed

akmorrow13 force-pushed the mango-python branch from 985c7cd to 5acfbaf Compare August 24, 2017 19:45

akmorrow13 force-pushed the mango-python branch from 5563fad to b482693 Compare September 22, 2017 04:31

akmorrow13 and others added 9 commits September 25, 2017 13:28

started mango-python

3b618c9

adding python

finished coverage distribution code

bcd5b69

updated mango-python to build and run with spark 2

updated python namespace to bdgenomics.mango

bc61b9f

cluster fixes

1a2bbe1

Update QC with improved coverage summary.

7b7dd08

Modify QC to accept multiple CoverageRDDs

51e650c

Updated QC, example files and tests

7a49d4c

merge changes with example files

e3a2aa5

updated for ADAM api

bb51c1f

akmorrow13 force-pushed the mango-python branch from b08023a to bb51c1f Compare September 25, 2017 20:29

akmorrow13 merged commit e478908 into bigdatagenomics:master Sep 25, 2017

akmorrow13 mentioned this pull request Oct 20, 2017

Coverage plot in notebook #298

Closed

akmorrow13 deleted the mango-python branch October 11, 2018 17:19

Mango python #307

Mango python #307

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