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Digestiflow ingest fails ingesting most recent MiSeq flowcells. #12

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martenj opened this issue Mar 21, 2022 · 0 comments
Open

Digestiflow ingest fails ingesting most recent MiSeq flowcells. #12

martenj opened this issue Mar 21, 2022 · 0 comments

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@martenj
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martenj commented Mar 21, 2022

MiSeqs running the latest Software (under Windows 10) will generate run folders that are not recognised by Digestiflow ingest or falsely guessed as MiniSeq Runs.

Reason wrong folder layout:

src/ingest/mod.rs:            FolderLayout::MiSeq => "runParameters.xml",
src/ingest/mod.rs:            FolderLayout::MiniSeq => "RunParameters.xml",
src/ingest/mod.rs:            FolderLayout::HiSeqX => "RunParameters.xml",
src/ingest/mod.rs:            FolderLayout::NovaSeq => "RunParameters.xml",

The current MiSeq RTA software switched filename to "RunParameters.xml".

Effect:

Digestiflow web indicates that the run failed, with planned Reads set to -2147483648T,-2147483648B,-2147483648B,-2147483648Tdoe to the missing file (int parsing error).

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