v0.3.4 for F1000 submission

Fix CWL stdout by removing the "None" string appearing at the end of file.

v0.3.2

release for F1000 submission

v0.3.1

• DOI are not fetched when only PMID or PMCID is given on bio.tools through this API
• Addition of --inout_biotools to also write inputs and outputs from https://bio.tools in the tool description
• Namespaces have been added to cwlgen library so more information can be written in the CWL tool description
• Better errors and warnings handling for code analysis part
• ToolDog is not asking for id/version anymore but only id instead

v0.3.0

• Addition of source code analysis feature:

  • use argparse2tool in a docker container
  • only cover python tools using argparse

• Both part of ToolDog can be run independently:

  • tooldog --analyse tool_id/version
  • tooldog --annotate tool_id/version

• Options are available to specify language of the tool manually, as well as a path to access source code locally

v0.2.2

• Fix PyPi deployment issue
• Start defining structure for analysis part

v0.2.1

• Modify architecture of ToolDog
• add --analyse (feature not available yet) and --annotate arguments
• update unit tests with new release of EDAM
• Problem with PyPi deployment

v0.2.0

This is the first release of Tooldog:

• Import bio.tools description from online or local JSON file

• Generation of Galaxy XML:

  • Generates skeleton from bio.tools description (metadata)
  • Possibility to add EDAM annotation and citations to existing Galaxy XML

• Generation CWL tool:

  • Generates skeleton from bio.tools description (metadata)