Bio2BEL DrugBank

Converts DrugBank 5.0 to BEL.

Installation

bio2bel_drugbank can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_drugbank

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/drugbank.git@master

Setup

Warning

DrugBank requires a bit of downloading and file organization. Will be documented soon.

Python REPL

>>> import bio2bel_drugbank
>>> drugbank_manager = bio2bel_drugbank.Manager()
>>> drugbank_manager.populate()

Command Line Utility

bio2bel_drugbank populate

Citations

• Wishart, D. S., et al. (2018). DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Research, 46(D1), D1074–D1082.