Long overdue updates to main #13
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# Changes to be committed: # modified: README.md # renamed: src/ConvertToSchema.py -> bcotool/ConvertToSchema.py # renamed: src/JsonUtils.py -> bcotool/JsonUtils.py # renamed: src/README.md -> bcotool/README.md # new file: bcotool/__init__.py # renamed: src/bco_runner.py -> bcotool/app_runner.py # renamed: src/functions.py -> bcotool/bcoutils.py # renamed: src/__init__.py -> bcotool/biocomputeobject/__init__.py # renamed: src/FileUtils.py -> bcotool/fileUtils.py # new file: bcotool/validate.py # deleted: src/__pycache__/functions.cpython-39.pyc
Changes to be committed: modified: bcotool/app_runner.py
Changes to be committed: modified: bcotool/app_runner.py modified: bcotool/bcoutils.py modified: data_tests/notes.md
On branch main
Changes to be committed: deleted: bco-tool/__init__.py deleted: bco-tool/library/ConvertToSchema.py deleted: bco-tool/library/FileUtils.py deleted: bco-tool/library/JsonUtils.py deleted: bco-tool/library/README.md deleted: bco-tool/library/__init__.py new file: bcotool/apitest.py renamed: bco-tool/bco_runner.py -> bcotool/bco_runner.py new file: bcotool/bcoapi.py
Conflicts: bcotool/ConvertToSchema.py bcotool/JsonUtils.py bcotool/README.md bcotool/bcotool.py bcotool/fileUtils.py Changes to be committed: modified: README.md new file: bcotool/apitest.py new file: bcotool/bco_runner.py new file: bcotool/bcoapi.py
Changes to be committed: new file: OMX_000003.json modified: bcotool/apitest.py new file: tst.json
Changes to be committed: modified: README.md modified: bcotool/bco_runner.py modified: data_tests/blast/HepC-DB.fasta modified: data_tests/blast/M67463-HepC.fa modified: data_tests/blast/blastn-homologs.cwl modified: data_tests/blast/blastn-homologs.yml modified: data_tests/blast/blastn.cwl modified: data_tests/blast/makeblastdb.cwl new file: data_tests/collapsed-cwl-blastn-homologs.json modified: data_tests/cwl-blastn-homologs.json modified: requirements.txt deleted: setup.py
Changes to be committed: modified: .gitignore modified: README.md modified: bcotool/bco_runner.py Untracked files: env/
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