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update snakemake-wrapper-utils to 0.5.2 (#39979)
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* update snakemake-wrapper-utils to 0.5.2

* make package name in sdist `.tar.gz` filename conform to specs (using underscores)

The official specs for sdist file names require that the package name is in snake case, see these places:
* https://peps.python.org/pep-0625/#specification
* https://packaging.python.org/en/latest/specifications/binary-distribution-format/#escaping-and-unicode
* https://peps.python.org/pep-0491/#escaping-and-unicode

[`poetry` switched to conforming to these specs with version `1.2.2`](https://github.com/python-poetry/poetry/releases/tag/1.2.2), see:
* poetry-core pull request with the actual code changes: python-poetry/poetry-core#484
* poetry pull request pulling them in: python-poetry/poetry#6621

Thus, all (bio-)conda recipes whose sources are built with `poetry` and uploaded to pypi are likely to face the same issue.

As `snakemake-wrapper-utils` only contains hyphens (`-`) as non-word characters, the suggested `replace("-","_")` should be safe and enough.

But a thorough solution should be implemented in `grayskull` (that does conda recipe templating for pypi packages), and in the tooling of `conda-forge` and `bioconda`. One solution to make such recipes more future-proof would be to make tooling respect the [official guidance to query the pypi JSON API to get download urls](https://warehouse.pypa.io/api-reference/integration-guide.html#official-guidance). Examples of how to do this are here:
* [stackoverflow answer with example code of querying the pypi JSON API for a download URL](https://stackoverflow.com/a/48327216)
* [link to the pypi code for generating the currently used standardized redirect links at `pypi.io`, that also uses the JSON API](pypi/warehouse#13240 (comment))

* closing bracket; use jinja2 `replace()` filter instead of python `str.replace()`

* update sha256 according to https://pypi.org/pypi/snakemake-wrapper-utils/0.5.2/json
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dlaehnemann authored Mar 20, 2023
1 parent 6998559 commit 05b4b42
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions recipes/snakemake-wrapper-utils/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{% set name = "snakemake-wrapper-utils" %}
{% set version = "0.5.0" %}
{% set version = "0.5.2" %}

package:
name: "{{ name|lower }}"
version: "{{ version }}"

source:
url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
sha256: f6533334a0ff53133727cf2a95eff915d101b773e53866ecad4d4b94009bf5f5
url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name|replace("-", "_") }}-{{ version }}.tar.gz"
sha256: e23057a16b1acd2534b50e41583124a3155792f9c42e94c5bd40bc009c0a481a

build:
number: 0
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