Merge branch 'master' of github.com:ftegenfe/bioconda-recipes-fork

bioconda · Oct 3, 2024 · 0d96419 · 0d96419
2 parents a769112 + ed45f41
commit 0d96419
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diff --git a/recipes/afpdb/meta.yaml b/recipes/afpdb/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "afpdb" %}
-{% set version = "0.2.1" %}
+{% set version = "0.2.2" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 7e67c728a25c9ac565c79fa2615b0fd84ecbf9d661b1f575a863156e169fcf10
+  sha256: fbdc60785aba0177a3766f952df8bc848aa03adcc0693506cc9f1f3601449e98
 
 build:
   number: 0

diff --git a/recipes/apscale/meta.yaml b/recipes/apscale/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "apscale" %}
-{% set version = "2.0.2" %}
+{% set version = "2.0.3" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/apscale-{{ version }}.tar.gz
-  sha256: 13d32ad87c1cf2d161bd577421e848006de8bcbb831aab15e5ecd3a5b6fc4563
+  sha256: 52cf592e1446c958b781e5a134a2945989b33008805f46a071c97d073d330f00
 
 build:
   entry_points:

diff --git a/recipes/bactopia-teton/meta.yaml b/recipes/bactopia-teton/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.5" %}
+{% set version = "1.1.1" %}
 
 package:
   name: bactopia-teton
@@ -12,7 +12,7 @@ build:
 
 source:
   url: https://github.com/bactopia/bactopia-teton/archive/v{{version}}.tar.gz
-  sha256: 4340da1ca721850564dcc05491ee396d1f9a1bbf662de5ede12fa29c50c1f3be
+  sha256: c62d0f74d5d4f48573af055424368de4ec4f88b744c7e3d451f818838f3b2da1
 
 requirements:
   run:
@@ -28,13 +28,14 @@ requirements:
     - pigz
     - python >=3.6,<3.11
     - sed
-    - sizemeup >=1.0.2
+    - sizemeup >=1.2.3
     - sra-human-scrubber >=2.2
 
 test:
   commands:
     - "bactopia-teton"
     - "kraken-bracken-summary.py --help"
+    - "teton-prepare.py --help"
 
 about:
   home: https://bactopia.github.io/

diff --git a/recipes/bambamc/build.sh b/recipes/bambamc/build.sh
@@ -1,7 +1,12 @@
 #!/usr/bin/env bash
 
+set -xe
+
+# use newer config.guess and config.sub that support osx arm64
+cp ${RECIPE_DIR}/config.* .
+
 export C_INCLUDE_PATH=${PREFIX}/include
 export LIBRARY_PATH=${PREFIX}/lib
 ./configure --prefix=${PREFIX}
-make
+make -j ${CPU_COUNT}
 make install