fix: Add python dependencies

bioconda · Oct 11, 2024 · 69aa6da · 69aa6da
1 parent e5b9e7a
commit 69aa6da
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Showing 2 changed files with 16 additions and 6 deletions.
diff --git a/recipes/rna-seqc/build.sh b/recipes/rna-seqc/build.sh
@@ -1,9 +1,9 @@
 #!/bin/bash
 set -eu -o pipefail
 
-cd ./travis/build/broadinstitute/rnaseqc
 export CFLAGS="${CFLAGS} -fcommon"
 
+cd rnaseqc
 pushd SeqLib/bwa
 sed -i.bak '/^DFLAGS=/s/$/ $(LDFLAGS)/' Makefile
 make CC="$CC" CFLAGS="$CFLAGS" LDFLAGS="$LDFLAGS"
@@ -30,3 +30,6 @@ make \
 mkdir -p $PREFIX/bin
 cp rnaseqc $PREFIX/bin
 
+# Install python scripts
+cd python
+$PYTHON setup.py install
diff --git a/recipes/rna-seqc/meta.yaml b/recipes/rna-seqc/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.3.5" %}
-{% set sha256sum = "44e81f01f2b661a7621f34e3b645f5727bc7143841f1df053723e23ba298d2c6" %}
+{% set version = "2.4.2" %}
+{% set sha256sum = "b214151408696430aead56921b255e2b09efe5f6087a68446deae399227a1303" %}
 
 package:
   name: rna-seqc
@@ -10,7 +10,7 @@ source:
   sha256: '{{ sha256sum }}'
 
 build:
-  number: 6
+  number: 1
 
 requirements:
   build:
@@ -29,14 +29,21 @@ requirements:
     - boost-cpp
     - xz
     - zlib
+    - numpy
+    - pandas
+    - matplotlib-base
+    - seaborn
+    - nbformat
+    - pip:
+        - agutil
 test:
   commands:
     - rnaseqc --version
 
 about:
-  home: https://github.com/broadinstitute/rnaseqc 
+  home: https://github.com/broadinstitute/rnaseqc
   license_url: https://raw.githubusercontent.com/broadinstitute/rnaseqc/master/LICENSE
-  # license_file: LICENSE  # not distributed :-/
+  license_file: LICENSE
   license: BSD 3-clause
   license_family: BSD
   summary: Fast, efficient RNA-Seq metrics for quality control and process optimization