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Update build.sh
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TobyBaril authored Oct 3, 2024
1 parent a94e867 commit 821eece
Showing 1 changed file with 7 additions and 27 deletions.
34 changes: 7 additions & 27 deletions recipes/heliano/build.sh
Original file line number Diff line number Diff line change
@@ -22,13 +22,13 @@ SPLIT=${PACKAGE_HOME}/SplitJoint.R
SORT=${PACKAGE_HOME}/Sort.sh
myPYTHON_PATH=`which python3`

sed -i.bak "s|_INTERPRETERPYTHON_PATH_|${myPYTHON_PATH}|" ${PACKAGE_HOME}/heliano
sed -i.bak "s|_HMM_|${HMMmodel}|" ${PACKAGE_HOME}/heliano
sed -i.bak "s|_HEADER_|${Headermodel}|" ${PACKAGE_HOME}/heliano
sed -i.bak "s|_FISHER_|${FISHER}|" ${PACKAGE_HOME}/heliano
sed -i.bak "s|_BOUNDARY_|${BCHECK}|" ${PACKAGE_HOME}/heliano
sed -i.bak "s|_SPLIT_JOINT_|${SPLIT}|" ${PACKAGE_HOME}/heliano
sed -i.bak "s|_SORTPRO_|${SORT}|" ${PACKAGE_HOME}/heliano
sed -i.bak "s|_INTERPRETERPYTHON_PATH_|${myPYTHON_PATH}|" ${PACKAGE_HOME}/heliano.py
sed -i.bak "s|_HMM_|${HMMmodel}|" ${PACKAGE_HOME}/heliano.py
sed -i.bak "s|_HEADER_|${Headermodel}|" ${PACKAGE_HOME}/heliano.py
sed -i.bak "s|_FISHER_|${FISHER}|" ${PACKAGE_HOME}/heliano.py
sed -i.bak "s|_BOUNDARY_|${BCHECK}|" ${PACKAGE_HOME}/heliano.py
sed -i.bak "s|_SPLIT_JOINT_|${SPLIT}|" ${PACKAGE_HOME}/heliano.py
sed -i.bak "s|_SORTPRO_|${SORT}|" ${PACKAGE_HOME}/heliano.py

# set permissions to files
cp ${PACKAGE_HOME}/heliano.py ${PACKAGE_HOME}/heliano
@@ -43,26 +43,6 @@ df -h
cd ${PREFIX}/bin
ln -sf ${PACKAGE_HOME}/heliano
ln -sf ${PACKAGE_HOME}/heliano_cons













## set pathes for heliano_cons

cp heliano_cons.py heliano_cons
sed -i "s|_INTERPRETERPYTHON_PATH_|${myPYTHON_PATH}|" heliano_cons
chmod 755 heliano_cons

if [ ! -d "bin" ];then mkdir bin;fi
mv heliano heliano_cons bin/

echo "Succeed! Please find programs in bin/ directory."

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