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Update pdivas recipe (#52089)
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* Update pdivas to version 1.2.0

* Fix lint error by adding run_exports to meta.yaml

* Add run_exports to meta.yaml to fix lint error

* Update meta.yaml with new changes

* Update meta.yaml with new changes

---------

Co-authored-by: richard-burhans <burhans@bx.psu.edu>
Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
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3 people authored Nov 21, 2024
1 parent 838bee1 commit a35bede
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21 changes: 21 additions & 0 deletions recipes/pdivas/LICENSE
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@@ -0,0 +1,21 @@
MIT License

Copyright (c) 2023 Ryo Kurosawa

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
38 changes: 21 additions & 17 deletions recipes/pdivas/meta.yaml
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{% set name = "pdivas" %}
{% set version = "1.1.0" %}
{% set version = "1.2.0" %}

package:
name: "{{ name|lower }}"
version: "{{ version }}"
name: {{ name|lower }}
version: {{ version }}

source:
url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
sha256: ca33dc31ecfa9c505105a25146ea8efcdddb1a13cc1ac990c29561cc911d74b9
sha256: 4a2234564557622c5bd2213478956c4a4858ba6768251d24ee43a4fc7550f721

build:
number: 0
noarch: python
entry_points:
- pdivas=pdivas.__main__:main
script: "{{ PYTHON }} -m pip install . -vv"
noarch: python
script: {{ PYTHON }} -m pip install . -vv
number: 0
run_exports:
- {{ pin_subpackage('pdivas', exact=True) }}

requirements:
host:
- pip
- python
- pip
run:
- cyvcf2
- numpy
- pandas
- python
- scikit-learn
- pandas >=1.3
- numpy >=1.21
- cyvcf2 >=0.11
- scikit-learn =1.0.2

test:
imports:
- pdivas
commands:
- pip check
- pdivas --help
requires:
- pip

about:
home: "https://github.com/shiro-kur/PDIVAS"
license: MIT
license_family: OTHER
license_file:
summary: "PDIVAS: Pathogenicity predictor of Deep-Intronic Variants causing Aberrant Splicing"
home: https://github.com/shiro-kur/PDIVAS
summary: 'PDIVAS: Pathogenicity predictor of Deep-Intronic Variants causing Aberrant Splicing'
license: 'MIT'
license_file: LICENSE

extra:
recipe-maintainers:
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