edit build.sh

bioconda · Nov 13, 2024 · f1fca89 · f1fca89
1 parent 9623596
commit f1fca89
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Showing 2 changed files with 6 additions and 3 deletions.
diff --git a/recipes/muse/fix-install_muse.sh.patch b/recipes/muse/fix-install_muse.sh.patch
@@ -1,5 +1,5 @@
 diff --git a/install_muse.sh b/install_muse.sh
-index 7bc2153..b27d5a8 100755
+index 7bc2153..892c45b 100755
 --- a/install_muse.sh
 +++ b/install_muse.sh
 @@ -5,12 +5,14 @@ make clean
@@ -44,8 +44,9 @@ index 7bc2153..b27d5a8 100755
 +git checkout 1.21
 +git submodule update --init --recursive
  autoreconf -i
- ./configure
+-./configure
 -make -j4
++./configure --with-libdeflate --enable-libcurl LDFLAGS='-L${PREFIX}/lib -Wl,-rpath,${PREFIX}/lib'
 +make -j${CPU_COUNT}
  cp libhts.a ../lib/
 

diff --git a/recipes/muse/meta.yaml b/recipes/muse/meta.yaml
@@ -26,14 +26,16 @@ requirements:
     - {{ compiler('cxx') }}
     - {{ compiler('c') }}
     - make
+    - cmake
     - autoconf
     - automake
     - libtool
   host:
     - llvm-openmp  # [osx]
     - libgomp  # [linux]
     - libcurl
-    - htslib
+    - libdeflate
+    - biobambam
     - bzip2
     - xz
     - zlib