Update gzrt to v0.9.1 (#52870)

* Update gzrt to v0.9.1 * Fix patch * Update meta.yaml * Update build.sh
bioconda · Dec 18, 2024 · f621b02 · f621b02
1 parent 7d1818a
commit f621b02
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Showing 3 changed files with 35 additions and 31 deletions.
diff --git a/recipes/gzrt/0001-Makefile.patch b/recipes/gzrt/0001-Makefile.patch
@@ -0,0 +1,13 @@
+diff --git a/Makefile b/Makefile
+index 939947c..df5fb6a 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,7 +1,7 @@
+ all: gzrecover
+
+ gzrecover: gzrecover.o
+-	cc -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 gzrecover.c -lz -o gzrecover
++	$(CC) -O3 -Wall -Wno-format -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 gzrecover.c -o gzrecover -lz
+
+ clean:
+ 	rm gzrecover
diff --git a/recipes/gzrt/build.sh b/recipes/gzrt/build.sh
@@ -3,12 +3,18 @@
 # Exit on error
 set -xe
 
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+mkdir -p "${PREFIX}/bin"
+
 if [ -z "$PREFIX" ]; then
     echo "PREFIX environment variable not set"
     exit 1
 fi
 
-export CFLAGS="${CFLAGS:-} -I${PREFIX}/include"
+export CFLAGS="${CFLAGS:-} -O3 -I${PREFIX}/include"
 export LDFLAGS="${LDFLAGS:-} -L${PREFIX}/lib"
 export CPATH="${PREFIX}/include"
 
@@ -35,24 +41,5 @@ if [ ! -f "$(command -v cc)" ]; then
     export PATH="${SRC_DIR}/bin:${PATH}"
 fi
 
-if ! make -j"${CPU_COUNT}"; then
-    echo "Build failed"
-    exit 1
-fi
-
-if [ ! -f gzrecover ]; then
-    echo "Build did not produce gzrecover binary"
-    exit 1
-fi
-
-chmod 755 gzrecover
-
-if ! mkdir -p "$PREFIX/bin"; then
-    echo "Failed to create bin directory"
-    exit 1
-fi
-
-if ! cp gzrecover "$PREFIX/bin/"; then
-    echo "Failed to install gzrecover"
-    exit 1
-fi
+make CC="${CC}" -j"${CPU_COUNT}"
+install -v -m 0755 gzrecover "${PREFIX}/bin"
diff --git a/recipes/gzrt/meta.yaml b/recipes/gzrt/meta.yaml
@@ -1,16 +1,18 @@
-{% set version = "0.8" %}   # latest release on 2013-10-03
-{% set sha256 = "b0b7dc53dadd8309ad9f43d6d6be7ac502c68ef854f1f9a15bd7f543e4571fee" %}
+{% set version = "0.9.1" %}
+{% set sha256 = "97543b5c11bcbfd1fd42671c61fae11fa3040ba8235641ae77ce3fb91c2d5863" %}
 
 package:
   name: gzrt
   version: {{ version }}
 
 source:
-  url: https://www.urbanophile.com/arenn/hacking/gzrt/gzrt-{{ version }}.tar.gz
+  url: https://github.com/arenn/gzrt/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    - 0001-Makefile.patch
 
 build:
-  number: 1
+  number: 0
   run_exports:
     - {{ pin_subpackage('gzrt', max_pin="x.x") }}
 
@@ -31,18 +33,20 @@ test:
     - gzrecover test.gz || [[ $? -eq 1 ]]
 
 about:
-  home: https://www.urbanophile.com/arenn/hacking/gzrt
-  summary: "Unofficial build of the gzip Recovery Toolkit aka gzrecover"
-  license: GPL-2.0-only
+  home: "https://www.urbanophile.com/arenn/hacking/gzrt"
+  summary: "Unofficial build of the gzip Recovery Toolkit aka gzrecover."
+  license: "GPL-2.0-only"
   license_family: GPL
-  license_file: gpl-2.0.txt
+  license_file: "gpl-2.0.txt"
   description: |
     gzrecover is a program that will attempt to extract any readable data
     out of a gzip file that has been corrupted.
-  dev_url: https://github.com/arenn/gzrt
+  dev_url: "https://github.com/arenn/gzrt"
+  doc_url: "https://github.com/arenn/gzrt/blob/v{{ version }}/README"
 
 extra:
   additional-platforms:
     - linux-aarch64
+    - osx-arm64
   recipe-maintainers:
     - mazzalab