galaxy_sequence_util: pin python

[bernt-matthias]

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build:
  run_exports:
    - ...

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Case	run_exports statement
semantic versioning	{{ pin_subpackage("myrecipe", max_pin="x") }}
semantic versioning (0.x.x)	{{ pin_subpackage("myrecipe", max_pin="x.x") }}
known breakage in minor versions	{{ pin_subpackage("myrecipe", max_pin="x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
known breakage in patch versions	{{ pin_subpackage("myrecipe", max_pin="x.x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
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Summary by CodeRabbit

• New Features

  • Updated compatibility for the galaxy_sequence_utils package to support Python versions less than 3.12.

• Bug Fixes

  • Incremented build number for improved version tracking.

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

📝 Walkthrough

📝 Walkthrough

Walkthrough

The changes involve updates to the meta.yaml file for the galaxy_sequence_utils package. The version number remains the same at 1.1.5, but the build number has been incremented from 1 to 2. The requirements section now specifies compatibility with Python versions less than 3.12 due to the deprecation of the imp module in that version. Additionally, a comment regarding the Python version constraint has been added to the run_exports section, while the entry points for scripts have not been altered.

Changes

File Path	Change Summary
recipes/galaxy_sequence_utils/meta.yaml	Build number updated from 1 to 2; Python requirement changed to <3.12; comment added to run_exports.

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[coderabbitai]

Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)

recipes/galaxy_sequence_utils/meta.yaml (1)

43-44: Approve Python version constraint, but suggest applying it to both environments.

The addition of the Python version constraint (<3.12) is a good proactive measure to prevent compatibility issues due to the deprecation of the imp module in Python 3.12. The comment clearly explains the reasoning behind this constraint.

However, for consistency and to ensure the package runs in a compatible environment, consider applying this constraint to both the host and run environments.

Apply the following change to the run environment as well:

  run:
-   - python
+   - python <3.12
    - six

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 5ca5963 and dd08828.

📒 Files selected for processing (1)

• recipes/galaxy_sequence_utils/meta.yaml (2 hunks)

🔇 Additional comments (2)

recipes/galaxy_sequence_utils/meta.yaml (2)

21-21: LGTM: Build number increment is appropriate.

The build number has been correctly incremented from 1 to 2. This is the proper approach when making changes to a package without altering its version number.

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Line range hint 1-58: Summary: Changes align with PR objectives, with a minor suggestion for improvement.

The modifications in this PR successfully implement version pinning for Python in the galaxy_sequence_utils recipe, aligning with the stated objectives. The build number increment and the addition of a Python version constraint are appropriate changes that enhance the stability and reliability of the package.

To fully meet the PR objectives and ensure consistency:

1. The Python version constraint has been correctly added to the host environment.
2. Consider applying the same constraint (<3.12) to the run environment as well.

These changes collectively address the goal of preventing potential issues arising from future changes in dependencies, particularly with respect to Python versions.

[bernt-matthias]

@BiocondaBot please add label