Update vclean to 0.2.0

[BiocondaBot]

Update vclean: 0.1.9 → 0.2.0

Info	Link or Description
Recipe	recipes/vclean (click to view/edit other files)
Summary	vClean: Assessing the contamination of viral genomes
Home	https://github.com/TsumaR/vclean
Releases	https://pypi.org/pypi/vclean/json
Recipe Maintainer(s)	@TsumaR

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request introduces an update to the meta.yaml file for the vclean package. The primary change is the increment of the version number from 0.1.9 to 0.2.0, which signifies a new release of the package. Alongside this version change, the SHA256 checksum for the source package has been updated to 690bffc90f7e2c200c503385e8288af503294c1005436e5f4ce97407c27e53bd. This checksum update indicates that the source package file has changed, ensuring integrity and verification of the new package version. No other alterations have been made to the structure or content of the meta.yaml file beyond these updates.

Possibly related PRs

• Update open-cravat to 2.9.1 #51088: Updates the open-cravat package's version and SHA256 checksum in the meta.yaml file.
• Update savana to 1.2.2 #51103: Updates the savana package's version and SHA256 checksum in the meta.yaml file.
• Update tissuumaps to 3.2.1.10 #51109: Updates the tissuumaps package's version and SHA256 checksum in the meta.yaml file.
• Update peaks2utr to 1.3.3 #51170: Updates the peaks2utr package's version and SHA256 checksum in the meta.yaml file.
• Update qtlseq to 2.2.5 #51172: Updates the qtlseq package's version and SHA256 checksum in the meta.yaml file.
• Update vclean to 0.1.9 #51174: Updates the vclean package's version and SHA256 checksum in the meta.yaml file, directly related to the main PR.

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[TsumaR]

@coderabbitai review

[coderabbitai]

Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)

recipes/vclean/meta.yaml (1)

Line range hint 26-27: Consider reviewing Python version constraint.

The recipe currently pins Python to exactly version 3.9.0 for both host and run environments. This might be unnecessarily restrictive. Consider allowing a range of Python versions unless there's a specific reason for this exact version.

For example, you could use:

  host:
    - python >=3.9,<3.10
  run:
    - python >=3.9,<3.10

This would allow for minor updates within Python 3.9.

Also applies to: 30-31

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between bccfa7a and 697c2f7.

📒 Files selected for processing (1)

• recipes/vclean/meta.yaml (1 hunks)

🧰 Additional context used

🔇 Additional comments (4)

recipes/vclean/meta.yaml (4)

2-2: Version update looks good.

The version has been correctly updated from 0.1.9 to 0.2.0, which aligns with the PR objective.

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Line range hint 1-58: LGTM, pending verification results.

The version update and SHA256 checksum change look good. Please review the suggestions about the Python version constraint and dependency verification. Once the verification tasks are complete and any necessary adjustments are made, this update should be ready to merge.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

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Line range hint 32-41: Verify dependencies.

It's a good practice to review the package's setup file (usually setup.py or pyproject.toml) to ensure that all dependencies are correctly listed and their versions are up-to-date.

#!/bin/bash
# Check for any changes in dependencies

# Fetch the setup file
setup_file=$(fd -t f -e py setup -e toml . | head -n 1)

if [ -n "$setup_file" ]; then
    echo "Found setup file: $setup_file"
    cat "$setup_file"
else
    echo "No setup file found. Checking pyproject.toml..."
    if [ -f "pyproject.toml" ]; then
        cat pyproject.toml
    else
        echo "No pyproject.toml found. Unable to verify dependencies."
    fi
fi

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

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10-10: Verify SHA256 checksum.

The SHA256 checksum has been updated. Let's verify its correctness.