Fix pgscatalog-utils 1.4.1 #51256
Fix pgscatalog-utils 1.4.1 #51256
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📝 Walkthrough📝 WalkthroughWalkthroughThe pull request introduces updates to the Possibly related PRs
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/pgscatalog-utils/meta.yaml (1)
37-37: Minor: Remove trailing spaces.There are trailing spaces on this line. While they don't affect functionality, removing them improves code cleanliness.
You can remove the trailing spaces to resolve this minor formatting issue.
🧰 Tools
🪛 yamllint
[error] 37-37: trailing spaces
(trailing-spaces)
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Review profile: CHILL
📒 Files selected for processing (1)
- recipes/pgscatalog-utils/meta.yaml (2 hunks)
🧰 Additional context used
🪛 yamllint
recipes/pgscatalog-utils/meta.yaml
[error] 37-37: trailing spaces
(trailing-spaces)
🔇 Additional comments (5)
recipes/pgscatalog-utils/meta.yaml (5)
2-2: Version update looks good.The package version has been correctly updated from 1.4.0 to 1.4.1, which aligns with the PR title and summary.
44-45: Addition of pip to test requirements is beneficial.Adding pip to the test requirements is a good practice. It enables the use of
pip checkduring testing, which can help identify potential dependency issues.
36-36: Addition of pip check command is beneficial.The inclusion of the
pip checkcommand in the test section is a good practice. It helps ensure that all package dependencies are correctly satisfied and can catch potential issues early.
26-28: Dependencies updated to newer versions.The dependencies for pgscatalog.calc, pgscatalog.core, and pgscatalog.match have been updated to newer versions. This change appears to be in line with the package update.
To ensure compatibility, please verify that these updated dependencies are indeed required for pgscatalog-utils 1.4.1. You can check this by running:
#!/bin/bash # Fetch the setup.py or pyproject.toml file to verify dependencies curl -sL https://pypi.io/packages/source/p/pgscatalog-utils/pgscatalog_utils-1.4.1.tar.gz | tar -xzO '*/setup.py' '*/pyproject.toml' 2>/dev/null | grep -E "pgscatalog\.(calc|core|match)"Compare the output with the dependencies specified in the meta.yaml file.
10-10: SHA256 checksum updated.The SHA256 checksum has been updated, which is necessary for the new version. However, it's crucial to verify that this checksum is correct for the new source package.
To verify the SHA256 checksum, you can run the following command:
Compare the output with the SHA256 in the meta.yaml file to ensure they match.
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/pgscatalog-utils/meta.yaml (1)
37-37: Minor formatting issues detected.There are two minor formatting issues in the file:
- Trailing spaces on line 37
- Extra blank line at the end of the file (line 58)
While these don't affect functionality, addressing them would improve code consistency.
You can fix these issues by applying the following changes:
- Remove the trailing spaces after the command on line 37.
- Remove the extra blank line at the end of the file (line 58).
Also applies to: 58-58
🧰 Tools
🪛 yamllint
[error] 37-37: trailing spaces
(trailing-spaces)
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (1)
- recipes/pgscatalog-utils/meta.yaml (3 hunks)
🧰 Additional context used
🪛 yamllint
recipes/pgscatalog-utils/meta.yaml
[error] 37-37: trailing spaces
(trailing-spaces)
[warning] 58-58: too many blank lines
(1 > 0) (empty-lines)
🔇 Additional comments (5)
recipes/pgscatalog-utils/meta.yaml (5)
Line range hint
2-2: Version and checksum update looks good.The version has been correctly updated to 1.4.1, and the SHA256 checksum has been updated accordingly. This is consistent with the PR objectives of updating pgscatalog-utils to version 1.4.1.
Also applies to: 11-11
15-15: Build number increment is correct.The build number has been incremented from 0 to 1, which is the correct practice when updating a package version. This ensures that the new build is recognized as a distinct version by the Conda package manager.
36-36: Addition of pip check is a good practice.The addition of pip to the test requirements and the inclusion of the
pip checkcommand in the test section are excellent improvements. This will help ensure that all dependencies are correctly installed and compatible, potentially catching issues early in the build process.Also applies to: 44-45
57-57: New maintainer added successfully.The addition of 'smlmbrt' as a new maintainer is a positive step for the project. This will help in sharing the maintenance responsibilities and potentially improve the overall management of the package.
26-28: Dependency updates look good, but verify compatibility.The version ranges for pgscatalog.calc, pgscatalog.core, and pgscatalog.match have been updated appropriately. The new constraints (>=0.3.0,<0.4.0, >=0.3.1,<0.4.0, and >=0.3.3,<0.4.0 respectively) follow best practices by specifying both lower and upper bounds.
To ensure these updates don't introduce compatibility issues, please run the following command:
This script creates a test environment with the minimum versions of the updated dependencies and attempts to import them. If successful, it suggests that the updates are compatible.
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#51254 accidentally has some dodgy dependencies 👀
Manual update to add
pipcheck and bump minor versionsBot commands for PR management
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