Update gsmap to 1.71.1 #51378
Update gsmap to 1.71.1 #51378
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📝 Walkthrough📝 Walkthrough📝 WalkthroughWalkthroughThis pull request includes modifications to the Possibly related PRs
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/gsmap/meta.yaml (1)
15-15: Consider the implications of build script changes.The build script has been modified with additional flags and increased verbosity:
--no-build-isolation: This can speed up the build process but may lead to inconsistencies if the build environment is not properly controlled.--no-cache-dir: This ensures a fresh install but may slow down repeated builds.- Verbosity increased to
-vvv: This provides more detailed output, which can be helpful for debugging but may produce excessive logs.Consider the following:
- Is build isolation necessary for consistent builds across different environments?
- Is caching beneficial for your CI/CD pipeline, or do you always want fresh installs?
- Is the highest verbosity level necessary, or would
-vvsuffice for most cases?
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🔇 Additional comments (5)
recipes/gsmap/meta.yaml (5)
2-2: LGTM: Version update correctly applied.The version has been successfully updated from 1.70 to 1.71, which aligns with the PR objective.
23-23: LGTM: Dependency updates look good.The following dependency changes have been made:
flitreplaced withflit-core: This is a good practice as it reduces the installation footprint.seabornchanged toseaborn-base: This likely reduces the installation size by excluding optional dependencies.These changes appear to be improvements. However, it's important to verify that the package still functions correctly with these updated dependencies.
Consider running the package's test suite or a sample workflow to ensure compatibility with these dependency changes.
Also applies to: 31-31
53-53: LGTM: License family addition is appropriate.The addition of
license_family: MITis a good practice. It provides more structured metadata about the license and is consistent with the MIT license specified in thelicensefield.
2-2: Summary: Changes are consistent with version update and optimizations.The changes in this PR are consistent with updating gsmap to version 1.71:
- Version number updated to 1.71.
- SHA256 checksum updated (pending verification).
- Build script modified for potential optimization.
- Dependencies updated to more specific or lightweight versions.
- License family added for improved metadata.
These changes appear to be well-coordinated and aimed at improving the package. Ensure all verifications pass, particularly the SHA256 checksum and compatibility with updated dependencies.
Also applies to: 10-10, 15-15, 23-23, 31-31, 53-53
10-10: Verify the SHA256 checksum.The SHA256 checksum has been updated, which is expected for a new version. However, it's crucial to ensure that this checksum corresponds to the correct source package for version 1.71.
Run the following script to verify the SHA256 checksum:
Update
gsmap: 1.70 → 1.71.1recipes/gsmap(click to view/edit other files)This pull request was automatically generated (see docs).