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Add pyhmmsearch #51419
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Add pyhmmsearch #51419
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410aef6
Add pyhmmsearch
apcamargo d50a150
Add noarch
apcamargo 5a69316
Change entrypoints
apcamargo 4498d70
Change entrypoints
apcamargo 306ba88
edit run_exports
mencian d1d836d
Change entrypoints
apcamargo 63e7ca7
try just import tests
mencian 88ac77a
Merge branch 'master' into pyhmmsearch
mencian f49a656
Merge branch 'master' into pyhmmsearch
mencian be3b62d
Update version
apcamargo 5d13e07
Merge branch 'bioconda:master' into pyhmmsearch
apcamargo 2ec368e
Add version constraints
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,48 @@ | ||
| {% set name = "pyhmmsearch" %} | ||
| {% set version = "2024.10.18" %} | ||
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| package: | ||
| name: {{ name|lower }} | ||
| version: {{ version }} | ||
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| source: | ||
| url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/pyhmmsearch-{{ version }}.tar.gz | ||
| sha256: 50c150659a45934b5b69a0459038bb1c304612951c67bd046eb72e5102b29692 | ||
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| build: | ||
| script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir | ||
| number: 0 | ||
| noarch: python | ||
| entry_points: | ||
| - pyhmmsearch=pyhmmsearch.pyhmmsearch:main | ||
| - reformat_pyhmmsearch=pyhmmsearch.reformat_pyhmmsearch:main | ||
| - serialize_hmm_models=pyhmmsearch.serialize_hmm_models:main | ||
| run_exports: | ||
| - {{ pin_subpackage("pyhmmsearch", max_pin=None) }} | ||
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| requirements: | ||
| host: | ||
| - python | ||
| - pip | ||
| run: | ||
| - python | ||
| - pyhmmer >=0.10.12 | ||
| - pandas >= 2 | ||
| - tqdm >= 4 | ||
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| test: | ||
| imports: | ||
| - pyhmmsearch | ||
| commands: | ||
| - pyhmmsearch --help | ||
| - reformat_pyhmmsearch --help | ||
| - serialize_hmm_models --help | ||
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| about: | ||
| home: "https://github.com/new-atlantis-labs/pyhmmsearch-stable" | ||
| summary: "Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer." | ||
| license: MIT | ||
| license_family: MIT | ||
| license_file: LICENSE | ||
| dev_url: "https://github.com/new-atlantis-labs/pyhmmsearch-stable" | ||
| doc_url: "https://github.com/new-atlantis-labs/pyhmmsearch-stable/blob/main/README.md" | ||
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Reconsider the use of
--no-deps --no-build-isolationflags.The build script uses
--no-deps --no-build-isolationflags, which may prevent necessary dependencies from being installed during the build process. This could lead to build failures or runtime issues if required packages are not present in the environment.Consider removing these flags unless there's a specific reason for their inclusion. If they are necessary, please provide a justification in a comment.
📝 Committable suggestion