Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update decom recipe to version 0.0.32 and align dependencies #51723

Merged
merged 8 commits into from
Oct 29, 2024
Merged

Update decom recipe to version 0.0.32 and align dependencies #51723

Changes from 4 commits
Commits
Show all changes
8 commits
Select commit Hold shift + click to select a range
3139530
Update decom recipe to version 0.0.32 and align dependencies
CamilaDuitama Oct 28, 2024
53df070
Address linting issues: shorten summary, add run_exports
CamilaDuitama Oct 28, 2024
99596ca
Add pointer to LICENSE file and remove strict pinning for python
CamilaDuitama Oct 29, 2024
4261ec5
Make python restriction more lenient + add setuptools
CamilaDuitama Oct 29, 2024
59c8feb
sync dependencies with grayskull; loosen dependency versions
mencian Oct 29, 2024
d208109
try dask instead of dask-core
mencian Oct 29, 2024
5d8abc8
add git back
mencian Oct 29, 2024
51429ba
turns out setuptools is needed
mencian Oct 29, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
45 changes: 29 additions & 16 deletions recipes/decom/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,17 +2,15 @@
{% set version = "0.0.32" %}

package:
name: decom
name: "{{ name|lower }}"
version: "{{ version }}"

source:
url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
sha256: c9efaa97b7abfe6f19f01a199ca6c7a7b32ec699f886d226667b8b5fe562dd88

build:
run_exports:
- {{ pin_subpackage('decom', max_pin="x") }}
number: 0
number: 1
noarch: python
entry_points:
- decOM = decOM.__main__:main
Expand All @@ -22,23 +20,36 @@ build:
- decOM-CV = decOM.CV.__main__:main
- decOM-MST = decOM.MST.__main__:main
script: "{{ PYTHON }} -m pip install . -vv"
run_exports:
- {{ pin_subpackage('decom', max_pin='x.x.x') }}

requirements:
host:
- pip
- python
- python >=3.12,<3.14
- setuptools
run:
- colorama
- dask >=2021.12.0
- importlib_resources >=5.4.0
- python-kaleido
- numpy >=1.7
- pandas
- plotly >=5.5.0
- python
- python >=3.12,<3.14
- setuptools
- colorama >=0.4.6
- numpy >=1.26.0,<1.27
- pandas >=2.2.3,<2.3
- plotly >=5.24.1,<5.25
- dask >=2024.9.1
- importlib_resources >=6.4.5
- python-kaleido >=0.2.1
- git

test:
imports:
- decOM
- decOM.CV
- decOM.LOO
- decOM.MST
- decOM.aOralOut
- decOM.data
- decOM.format
- decOM.modules
commands:
- decOM --help
- decOM-aOralOut --help
Expand All @@ -52,9 +63,11 @@ about:
license: MIT
license_family: MIT
license_file: LICENSE
summary: "decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods"
doc_url: "https://github.com/CamilaDuitama/decOM"
dev_url: "https://camiladuitama.github.io/gradfolio/"
summary: "decOM: Microbial source tracking of ancient oral samples using k-mers"
description: |
decOM is a similarity-based microbial source tracking tool for contamination assessment of ancient oral samples using k-mer-based methods.
doc_url: https://github.com/CamilaDuitama/decOM
dev_url: https://github.com/CamilaDuitama/decOM

extra:
recipe-maintainers:
Expand Down
Loading