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add Corneto #51745

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merged 4 commits into from
Oct 29, 2024
Merged

add Corneto #51745

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60c181a
meta.yaml created by greyskull
nilchia Oct 28, 2024
d9c5a62
update meta.yaml
nilchia Oct 28, 2024
10decf5
Update recipes/corneto/meta.yaml
nilchia Oct 29, 2024
64e89d7
SPDX identifier
nilchia Oct 29, 2024
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46 changes: 46 additions & 0 deletions recipes/corneto/meta.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,46 @@
{% set name = "corneto" %}
{% set version = "1.0.0a0" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/corneto-{{ version }}.tar.gz
sha256: 966d50762f92047ea4e5d1a136607f20ae9ec1d585530a24ad5c95e700b24180

build:
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
number: 0
run_exports:
- {{ pin_subpackage("corneto", max_pin="x.x.x") }}

Comment on lines +12 to +18
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🛠️ Refactor suggestion

Consider relaxing version pinning for alpha release

The current run_exports configuration with max_pin="x.x.x" creates a strict version constraint. For an alpha release, consider using a more relaxed pinning strategy (e.g., x.x) to allow for rapid iterations while maintaining compatibility.

  run_exports:
-    - {{ pin_subpackage("corneto", max_pin="x.x.x") }}
+    - {{ pin_subpackage("corneto", max_pin="x.x") }}
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
build:
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
number: 0
run_exports:
- {{ pin_subpackage("corneto", max_pin="x.x.x") }}
build:
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
number: 0
run_exports:
- {{ pin_subpackage("corneto", max_pin="x.x") }}

requirements:
host:
- python >=3.9
- poetry-core >=1.0.0
- pip
run:
- python >=3.9
- numpy >=1.15,<2.0.0
- cvxpy-base >=1.5.0,<2.0.0
- scipy >=1.11.0,<2.0.0

test:
imports:
- corneto
commands:
- pip check
requires:
- pip
Comment on lines +30 to +36
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🛠️ Refactor suggestion

Consider enhancing test coverage

While the basic import test is good, consider adding more comprehensive tests to verify functionality:

 test:
   imports:
     - corneto
   commands:
     - pip check
+    - python -c "import corneto; assert corneto.__version__ == '1.0.0a0'"
   requires:
     - pip

Committable suggestion was skipped due to low confidence.


about:
home: https://github.com/saezlab/corneto/
summary: 'CORNETO: A Unified Framework for Omics-Driven Network Inference'
license: GPL-3.0-or-later
license_file: LICENSE

extra:
recipe-maintainers:
- nilchia
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