Update zdb to 1.3.4

[BiocondaBot]

Update zdb: 1.3.3 → 1.3.4

Info	Link or Description
Recipe	recipes/zdb (click to view/edit other files)
Summary	zDB is both a bacterial comparative genomics pipeline and a tool to visualize the results
Home	https://github.com/metagenlab/zDB/
Releases	https://github.com/metagenlab/zDB/tags
Recipe Maintainer(s)	@bkm, @njohner
Author	@metagenlab

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request updates the meta.yaml file for the zdb package. The primary changes include an increment in the package version from "1.3.3" to "1.3.4". Correspondingly, the source URL has been modified to reflect the new version's tarball, changing from https://github.com/metagenlab/zDB/archive/refs/tags/v1.3.3.tar.gz to https://github.com/metagenlab/zDB/archive/refs/tags/v1.3.4.tar.gz. Additionally, the SHA256 checksum has been updated to match the new version, changing from 9f5e29d3730740c2e60fb275db709916ef54d3a2c3e4cf54ae448e9add14bb49 to 6b9bb6433c05a1343794cc17e274dd58d202cc3a14a7f87b159fd381a8890e61. No other modifications were made to the meta.yaml file.

Possibly related PRs

• Update delly to 1.3.1 #51266: The update to the delly package's meta.yaml file involves changing the version and SHA256 checksum, similar to the version and checksum updates in the zdb package's meta.yaml.
• Update sizemeup to 1.3.0 #51334: The sizemeup package's meta.yaml file also reflects a version and SHA256 checksum update, paralleling the changes made in the zdb package.
• Update bactopia-py to 1.3.0 #51466: The bactopia-py package's meta.yaml file update includes a version and SHA256 checksum change, akin to the modifications in the zdb package.
• Update cosigt to version 0.1.3 #51540: The cosigt package's meta.yaml file shows a version and SHA256 checksum update, similar to the changes in the zdb package.
• Update crabs to 1.0.4 #51645: The crabs package's meta.yaml file update includes a version and SHA256 checksum change, reflecting the same type of modifications made in the zdb package.
• Update zol to 1.5.0 #51673: The zol package's meta.yaml file update involves a version and SHA256 checksum change, similar to the updates in the zdb package.
• Update pbskera to 1.3.0 #51734: The pbskera package's meta.yaml file reflects a version and SHA256 checksum update, paralleling the changes made in the zdb package.
• Update pbpigeon to 1.3.0 #51774: The pbpigeon package's meta.yaml file update includes a version and SHA256 checksum change, akin to the modifications in the zdb package.
• Update konezumiaid to 0.3.5 #51941: The konezumiaid package's meta.yaml file shows a version and SHA256 checksum update, similar to the changes in the zdb package.
• Update gfastats to 1.3.9 #51948: The gfastats package's meta.yaml file update involves a version and SHA256 checksum change, reflecting the same type of modifications made in the zdb package.

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between e42ddb6 and c5a7bcc.

📒 Files selected for processing (1)

• recipes/zdb/meta.yaml (2 hunks)

🧰 Additional context used

🪛 yamllint

recipes/zdb/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (4)

recipes/zdb/meta.yaml (4)

1-1: LGTM: Version update looks correct.

Version bump from 1.3.3 to 1.3.4 follows semantic versioning and matches the PR objective.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

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15-15: LGTM: SHA256 checksum format is valid.

The new checksum follows the correct format (64 characters, hexadecimal) and differs from the previous version as expected for a new release.

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Line range hint 7-11: LGTM: Build configuration is appropriate for version bump.

Build number is correctly reset to 0 for the new version, and the noarch configuration remains appropriate for this package.

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14-14: Verify source URL accessibility.

The URL format is correct and consistent with GitHub's release tarball pattern.

✅ Verification successful

Source URL is accessible and valid

The URL is verified to be accessible with a successful HTTP 200 response after following redirects. The tag v1.3.4 exists in the metagenlab/zDB repository, confirming the source tarball's availability.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify that the source URL is accessible and returns a 200 status code

# Test: Check if the URL is accessible
curl -sI "https://github.com/metagenlab/zDB/archive/refs/tags/v1.3.4.tar.gz" | head -n1 | grep "HTTP/2 200"

Length of output: 107

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Script:

#!/bin/bash
# Let's try a different approach to verify the URL
# 1. Check if we get any HTTP response (including redirects)
# 2. Check the final status code
curl -sLI "https://github.com/metagenlab/zDB/archive/refs/tags/v1.3.4.tar.gz" | grep -i "HTTP/"

# Also verify if the tag exists in the repository
gh api repos/metagenlab/zDB/git/refs/tags/v1.3.4 --silent || echo "Tag not found"

Length of output: 179

---

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