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Update dnaio to 1.2.3 #52055

Merged
merged 2 commits into from
Nov 12, 2024
Merged

Update dnaio to 1.2.3 #52055

merged 2 commits into from
Nov 12, 2024

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Update dnaio: 1.2.21.2.3

install with bioconda Conda

Info Link or Description
Recipe recipes/dnaio (click to view/edit other files)
Summary Read and write FASTA and FASTQ files efficiently
Home https://github.com/marcelm/dnaio/
Releases https://pypi.org/pypi/dnaio/json
Recipe Maintainer(s) @marcelm

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Nov 12, 2024
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coderabbitai bot commented Nov 12, 2024

📝 Walkthrough
📝 Walkthrough

Walkthrough

The pull request updates the meta.yaml file for the dnaio package, changing the version from "1.2.2" to "1.2.3". The source URL has been modified to point to the new version's tarball at dnaio-1.2.3.tar.gz, and the SHA256 checksum has been updated to aad456d9f6272339958b2c5af32fd64d77a50aca12e394e7a143b4129d49b0b9. Additionally, the Python version requirement has been changed from python to python >=3.9 in both the host and run sections of the requirements. All other sections of the meta.yaml file, including build, test, about, and extra, remain unchanged.

Possibly related PRs

  • Update dnaio to 1.2.2 #51157: This PR updates the dnaio package from version 1.2.1 to 1.2.2, which is directly related to the main PR that updates dnaio from 1.2.2 to 1.2.3.
  • Update dnaio dependency for cutadapt #51188: This PR updates the cutadapt package to depend on dnaio >=1.2.2, which is relevant as the main PR updates dnaio to a newer version.
  • [biobb_dna] update 5.0.0 #51601: This PR updates the biobb_dna package to require python >=3.9, which aligns with the main PR's change to the Python version requirement in dnaio.

Suggested reviewers

  • rhpvorderman

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between cde141e and 5528e3e.

📒 Files selected for processing (1)
  • recipes/dnaio/meta.yaml (2 hunks)
🧰 Additional context used
🪛 yamllint
recipes/dnaio/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (3)
recipes/dnaio/meta.yaml (3)

1-1: LGTM: Version update is consistent

The version bump to 1.2.3 matches the PR objectives and is correctly referenced in the package metadata.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


8-9: Verify source integrity

The source URL and checksum have been updated for version 1.2.3.


23-23: Verify Python version constraint change

The addition of python >=3.9 constraint is a breaking change that could affect compatibility with dependent packages.

Consider documenting this breaking change in the package release notes and ensuring all dependent packages in the bioconda ecosystem are compatible with Python >=3.9.

Also applies to: 27-27


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@marcelm marcelm enabled auto-merge (squash) November 12, 2024 09:30
@marcelm marcelm merged commit 6c4caa0 into master Nov 12, 2024
6 checks passed
@marcelm marcelm deleted the bump/dnaio branch November 12, 2024 09:37
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