Update metabolights-utils to 1.3.1 #52110
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📝 WalkthroughWalkthroughThe pull request involves an update to the Possibly related PRs
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🔇 Additional comments (5)recipes/metabolights-utils/meta.yaml (5)Line range hint The build configuration is appropriate for a Python CLI package:
🧰 Tools🪛 yamllint[error] 1-1: syntax error: found character '%' that cannot start any token (syntax) Line range hint The version bump from 1.2.2 to 1.3.1 follows standard practices:
🧰 Tools🪛 yamllint[error] 1-1: syntax error: found character '%' that cannot start any token (syntax) Line range hint The dependencies have strict version pins. Let's verify compatibility and check for any security advisories. #!/bin/bash
# Description: Check dependency compatibility and security advisories
# Check if dependencies match those declared in pyproject.toml
curl -sL https://raw.githubusercontent.com/EBI-Metabolights/metabolights-utils/v1.3.1/pyproject.toml | grep -A 20 "^dependencies"
# Check for security advisories in key dependencies
gh api graphql -f query='
{
securityVulnerabilities(first: 5, ecosystem: PIP, package: "httpx") {
nodes {
advisory {
summary
severity
publishedAt
}
vulnerableVersionRange
}
}
}'🧰 Tools🪛 yamllint[error] 1-1: syntax error: found character '%' that cannot start any token (syntax)
Let's confirm the SHA256 checksum matches the source tarball from PyPI. #!/bin/bash
# Description: Verify SHA256 matches PyPI source
# Download tarball and compute SHA256
curl -sL https://pypi.io/packages/source/m/metabolights-utils/metabolights_utils-1.3.1.tar.gz | sha256sum
Let's confirm that version 1.3.1 exists on PyPI and is the latest stable release. ✅ Verification successfulThe previous script didn't provide clear results about the version availability. Let me try a different approach to verify the version. Version 1.3.1 is verified as the latest available release on PyPI The output confirms that version 1.3.1 exists on PyPI and is indeed the latest version available, showing a natural progression from previous versions (0.9.x → 1.0.x → 1.1.x → 1.2.x → 1.3.x). The version bump from 1.2.2 to 1.3.1 is appropriate. 🏁 Scripts executedThe following scripts were executed for the analysis: Script: #!/bin/bash
# Description: Verify version exists on PyPI and check if it's the latest
# Check if version exists and get release date
curl -s https://pypi.org/pypi/metabolights_utils/json | jq -r '.releases["1.3.1"].upload_time_iso_8601 // empty'
# Get latest version for comparison
curl -s https://pypi.org/pypi/metabolights_utils/json | jq -r '.info.version'
Length of output: 812 Script: #!/bin/bash
# Using a different PyPI API endpoint format
curl -s "https://pypi.org/simple/metabolights-utils/" | grep -o "metabolights[-_]utils-1.3.1" || echo "Version not found"
# Get all available versions
curl -s "https://pypi.org/simple/metabolights-utils/" | grep -o "metabolights[-_]utils-[0-9.]*" | sort -V
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Update
metabolights-utils: 1.2.2 → 1.3.1recipes/metabolights-utils(click to view/edit other files)This pull request was automatically generated (see docs).