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Update hisat2-pipeline to 1.0.8 #52178

Merged
merged 2 commits into from
Nov 19, 2024
Merged

Update hisat2-pipeline to 1.0.8 #52178

merged 2 commits into from
Nov 19, 2024

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Update hisat2-pipeline: 1.0.71.0.8

install with bioconda Conda

Info Link or Description
Recipe recipes/hisat2-pipeline (click to view/edit other files)
Summary A pipeline to automatically run an RNA-seq analysis using HISAT2/Stringtie using default settings
Home https://github.com/mcamagna/HISAT2-pipeline
Releases https://github.com/mcamagna/HISAT2-pipeline/tags
Author @mcamagna

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Nov 19, 2024
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coderabbitai bot commented Nov 19, 2024

📝 Walkthrough
📝 Walkthrough

Walkthrough

The pull request involves an update to the meta.yaml file for the hisat2-pipeline recipe. The version number has been changed from 1.0.7 to 1.0.8, indicating a new release of the software. Additionally, the SHA256 checksum has been updated from 4c21e62b8cf1e326b398eafb78e09d2b90843c852198bedb164ac5f1cfc7d33f to 0dfab47f5d95d448250fb9f0b973ee69b6d47b7baa41623141a6a0e11e18adc7. The build script has been modified to include the --no-build-isolation and --no-cache-dir flags, changing from -vv to -vvv. The max_pin value for the hisat2-pipeline subpackage has been adjusted from "x.x" to "x". Furthermore, setuptools has been added to the host requirements. The summary line has been updated to include a period at the end, and a new dev_url field has been added with a link to the GitHub repository. The overall structure and other metadata remain unchanged.

Possibly related PRs

  • Update meta.yaml for spec2vec #49857: This PR updates the meta.yaml file for the spec2vec package, including changes to the version number and build script flags, similar to the updates made in the main PR for hisat2-pipeline.
  • Update: Metabuli 1.0.8 #51030: This PR updates the meta.yaml file for the metabuli package, including a version bump and SHA256 checksum update, which parallels the changes in the main PR.
  • Update itsxpress to 2.1.3 #52117: This PR updates the meta.yaml file for the itsxpress package, including a version change and the addition of setuptools to the host requirements, similar to the modifications in the main PR.

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📥 Commits

Reviewing files that changed from the base of the PR and between 124bffc and 7aa2034.


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📥 Commits

Reviewing files that changed from the base of the PR and between 124bffc and 7aa2034.

📒 Files selected for processing (1)
  • recipes/hisat2-pipeline/meta.yaml (4 hunks)
🚧 Files skipped from review as they are similar to previous changes (1)
  • recipes/hisat2-pipeline/meta.yaml

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@mencian mencian merged commit 0958ade into master Nov 19, 2024
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@mencian mencian deleted the bump/hisat2_pipeline branch November 19, 2024 22:08
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