Fix MashMap v3.1.3 build.

[bkille]

The most recent build of MashMap v3.1.3 (PR #51161) is broken due to it being linked against BLIS instead of BLAS (issue #52321). It also appears that the GSL shared library is also missing according to the output in #52321, even though it is present in the recipe as a host and run dependency.

I don't know what caused this, but I'm going to rebuild and see if I run into the same issue.

Fixes #52321.

[bkille]

@mencian thanks for improving the meta.yaml and helping out with the OSX build. It seems that even though the OSX SDK is specified as 10.15 (or even 11.0), the CI container always downloads the 10.13 version:

Downloading 10.13 sdk
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

100 25.2M  100 25.2M    0     0  [36](https://github.com/bioconda/bioconda-recipes/actions/runs/12062066964/job/33635392250?pr=52373#step:7:37).3M      0 --:--:-- --:--:-- --:--:-- 36.3M
MacOSX10.13.sdk.tar.xz: OK
Found CONDA_BUILD_SYSROOT: /Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk

Is there another way to specify which OSX SDK to use? Thanks again for your help!

[martin-g]

See

bioconda-recipes/recipes/piscem/conda_build_config.yaml

Lines 1 to 4 in d237bfb

	MACOSX_DEPLOYMENT_TARGET: # [osx and x86_64]
	- "10.15" # [osx and x86_64]
	MACOSX_SDK_VERSION: # [osx and x86_64]
	- "10.15" # [osx and x86_64]

for example

[mencian]

@BiocondaBot please fetch artifacts

[BiocondaBot]

Package(s) built are ready for inspection:

Arch	Package	Zip File / Repodata	CI	Instructions
linux-64	mashmap-3.1.3-pl5321hb4818e0_2.tar.bz2	linux-64.zip	GitHub Actions	show You may also use conda to install after downloading and extracting the zip file. conda install -c ./packages <package name>
osx-64	mashmap-3.1.3-pl5321h66756e5_2.tar.bz2	osx-64.zip	GitHub Actions	show You may also use conda to install after downloading and extracting the zip file. conda install -c ./packages <package name>
osx-arm64	mashmap-3.1.3-pl5321h12b9755_2.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/9adb0e68-62aa-4375-9670-0d96e01012e4/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	mashmap-3.1.3-pl5321hdf7b3cb_2.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/974bcd8e-adee-4b9f-8410-2a26ac1fc9ac/artifacts/0/tmp/artifacts/packages <package name>

---

Docker image(s) built:

Package	Tag	CI	Install with docker
mashmap	3.1.3--pl5321hb4818e0_2	GitHub Actions	show Images are in the linux-64 zip file above.gzip -dc images/mashmap---3.1.3--pl5321hb4818e0_2.tar.gz | docker load

[mencian]

@bkille I've bumped the OSX SDK to 10.15 and that seems to have done the trick. Please take a look at the built artifacts to see if BLAS is correctly linked.