Update longreadsum to v1.5.0

recipes/longreadsum/build.sh

@@ -1,22 +1,29 @@
 #!/bin/bash
 
-# Build the C++ library
-
 # Add the library path to the LD_LIBRARY_PATH
 export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${PREFIX}/lib
 
+# Ensure the lib directory exists
+mkdir -p "${SRC_DIR}"/lib
+
 # Generate the SWIG files
+echo "Generating SWIG files..."
 swig -c++ -python -outdir "${SRC_DIR}"/lib -I"${SRC_DIR}"/include -I"${PREFIX}"/include -o "${SRC_DIR}"/src/lrst_wrap.cpp "${SRC_DIR}"/src/lrst.i
 
 # Generate the shared library
+echo "Building the shared library..."
 $PYTHON setup.py -I"${PREFIX}"/include -L"${PREFIX}"/lib install
 
 # Create the src directory
 mkdir -p "${PREFIX}"/src
 
 # Copy source files to the bin directory
+echo "Copying source files..."
 cp -r "${SRC_DIR}"/src/*.py "${PREFIX}"/bin
 
 # Copy the SWIG generated library to the lib directory
+echo "Copying SWIG generated library..."
 cp -r "${SRC_DIR}"/lib/*.py "${PREFIX}"/lib
 cp -r "${SRC_DIR}"/lib/*.so "${PREFIX}"/lib
+
+echo "Build complete."

recipes/longreadsum/meta.yaml

@@ -1,5 +1,5 @@
-{% set version = "1.3.1" %}
-{% set sha256 = "eb4c7677d43d80d19ddbac11900ae3a14efd6f2a3c4cc8bbc08e063a81e0e1df" %}
+{% set version = "1.5.0" %}
+{% set sha256 = "fe3acc37bdd5e703033b9e370f635ab9fe06ba09fd69e01fc00bc70ff6d8395a" %}
 
 package:
   name: longreadsum
@@ -9,8 +9,15 @@ source:
   url: https://github.com/WGLab/LongReadSum/archive/refs/tags/v{{ version }}.tar.gz
   sha256: '{{ sha256 }}'
 
+channels:
+  - conda-forge
+  - jannessp  # for pod5
+  - bioconda
+  - defaults
+
 build:
-  number: 3
+  number: 0
+  skip: true  # [py2k]
   entry_points:
     - longreadsum = entry_point:main
   run_exports:
@@ -21,33 +28,36 @@ requirements:
     - {{ compiler('cxx') }}
     - make
   host:
-    - python
+    - python =3.9
     - swig
-    - hdf5
-    - htslib
-    - zlib
-    - setuptools
+    - htslib =1.20
+    - ont_vbz_hdf_plugin  # Contains HDF5 as a dependency as well
+    - jannessp::pod5
+    - jannessp::lib-pod5
   run:
-    - python
+    - python =3.9
     - numpy
-    - hdf5
-    - htslib
+    - ont_vbz_hdf_plugin
+    - bioconda::htslib =1.20
     - plotly
+    - jannessp::pod5
+    - jannessp::lib-pod5
+    - pyarrow
 
 test:
-  commands:
-    - longreadsum --help
-
+    commands:
+        - export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH
+        - longreadsum --help
 about:
   home: https://github.com/WGLab/LongReadSum
   license: MIT
-  summary: 'Long read sequencing data quality control tool'
+  summary: 'Long read sequencing quality control tool'
   description: |
     A fast and flexible QC tool for long read sequencing data.
   dev_url: https://github.com/WGLab/LongReadSum
   doc_url: https://github.com/WGLab/LongReadSum#readme
 
-extra:
+  extra:
   additional-platforms:
     - linux-aarch64
     - osx-arm64