Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

troubleshoot transannot build #53488

Open
wants to merge 5 commits into
base: master
Choose a base branch
from
Open

troubleshoot transannot build #53488

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
0f070b0
troubleshoot
mariia-zelenskaia Jan 26, 2025
b1d5d82
troubleshoot
mariia-zelenskaia Jan 26, 2025
c8d4e2c
troubleshoot
mariia-zelenskaia Jan 26, 2025
da43606
troubleshoot
mariia-zelenskaia Jan 26, 2025
e57f859
Update meta.yaml
mariia-zelenskaia Jan 26, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
45 changes: 19 additions & 26 deletions recipes/transannot/build.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,32 +1,25 @@
#!/bin/bash -ex

mkdir -p build && pushd build

export INCLUDES="-I${PREFIX}/include"
export LIBPATH="-L${PREFIX}/lib"
export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
export CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include"
#!/bin/bash

ARCH_BUILD=""
case $(uname -m) in
aarch64)
ARCH_OPTS="-DHAVE_ARM8=1"
;;
*)
ARCH_OPTS="-DHAVE_SSE4_1=1"
;;
x86_64) ARCH_BUILD="-DHAVE_AVX2=1" ;;
arm64|aarch64) ARCH_BUILD="-DHAVE_ARM8=1" ;;
esac

if [ "$(uname)" == "Darwin" ]; then
export CMAKE_EXTRA="-DCMAKE_FIND_FRAMEWORK=NEVER -DCMAKE_FIND_APPBUNDLE=NEVER -Wno-dev"
else
export CMAKE_EXTRA="-Wno-dev"
fi
CUDA=0
case $(uname -s) in
Linux) CUDA=1 ;;
Darwin) CUDA=0 ;;
esac

cmake -S .. -B . -DCMAKE_INSTALL_PREFIX="${PREFIX}" \
-DCMAKE_BUILD_TYPE=RELEASE \
-DHAVE_TESTS=0 -DHAVE_MPI=0 "${ARCH_OPTS}" \
-DVERSION_OVERRIDE="${PKG_VERSION}" \
"${CMAKE_EXTRA}"
if [ -z "${ARCH_BUILD}" ]; then
echo "Invalid architecture"
exit 1
fi

cmake --build . --target install -j ${CPU_COUNT} -v
popd
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 ${ARCH_BUILD} -DVERSION_OVERRIDE="${PKG_VERSION}" \
-DCMAKE_CUDA_ARCHITECTURES="75-real;80-real;86-real;89-real;90" -DENABLE_CUDA=${CUDA} ..
make -j${CPU_COUNT} ${VERBOSE_CM}
make install
25 changes: 15 additions & 10 deletions recipes/transannot/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,40 +1,45 @@
{% set name = "transannot" %}
{% set version = "4.0.0" %}
{% set sha256 = "f610fd9fcc8e29fc4b19c53cde402126a2815577dc282909a50b83855c28355e" %}
{% set name = "transannot" %}

package:
name: {{ name }}
name: transannot
version: {{ version }}

source:
url: https://github.com/soedinglab/{{ name }}/archive/refs/tags/4-8cd2fdc.tar.gz
sha256: {{ sha256 }}

build:
number: 0
number: 1
run_exports:
- {{ pin_subpackage('transannot', max_pin="x") }}
- {{ pin_subpackage('transannot', max_pin=None) }}

requirements:
build:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
- {{ compiler('c') }}
- cmake
- make
- llvm-openmp # [osx]
- libgomp # [linux]
- cuda-nvcc # [linux]
- cuda-cudart-dev # [linux]
- cuda-version >=12.6 # [linux]
- perl
host:
- llvm-openmp # [osx]
- libgomp # [linux]
- gawk
- zlib
- bzip2
run:
- aria2
- wget
- perl
- gawk
- zlib
- bzip2

test:
commands:
- "transannot > /dev/null"
- transannot > /dev/null

about:
home: "https://github.com/soedinglab/transannot"
Expand Down