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Nextflow pipeline for analysis of Nanopore data from direct RNA sequencing. This is a joint project between CRG bioinformatics core and Epitranscriptomics and RNA Dynamics research group.
The current version is the 1.1. The original 1.0 published in the paper is here
We translated the pipelines using DSL2 and added a new pipeline!! A lot of improvements and bug fixes! https://github.com/biocorecrg/MoP2
Please read the documentation here: https://biocorecrg.github.io/master_of_pores/
If you use this tool, please cite our paper:
Please open an issue if you encounter any issues/troubles. However, please go over the previous issues (including closed issues) before opening a new issue, as your same exact question might have been already answered previously. Thank you!