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PG Header #206

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ACEnglish opened this issue Apr 21, 2016 · 1 comment
Closed

PG Header #206

ACEnglish opened this issue Apr 21, 2016 · 1 comment

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@ACEnglish
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Hello,

Is it possible to have mergedups populate the PG tag of the header?

Thanks

lomereiter pushed a commit that referenced this issue Apr 24, 2016
@plijnzaad
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Related to this, I read here that

the user can add/remove reference sequence, read group, or program information (corresponding to @sq, @rg and @pg lines in a header).

Was this indeed implemented? This would be so useful to have! E.g. it would make things much more tractable if sambamba view could be told to append something like
@PG ID:sambamba CL:sambamba view -h RPB3-a.bam --filter 'first_of_pair and template_length >= 70 and template_length <= 126' to the @PG-lines in the header!

I could not find any documentation on this, so if it is not implemented, I would like to request this as a feature

lomereiter pushed a commit that referenced this issue Sep 10, 2016
pjotrp pushed a commit to pjotrp/sambamba that referenced this issue Dec 13, 2016
pjotrp pushed a commit to pjotrp/sambamba that referenced this issue Dec 13, 2016
@pjotrp pjotrp closed this as completed Feb 24, 2017
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3 participants