humboldt-for-eco-survey-data

This repository contains script to infer non-detection of target taxa of a marine ecological survey dataset using Humboldt Extension.

Repo structure

.
├── README.md
├── humboldt.Rproj      : R project file
├── images              : directory to store images used in Rmd file
├── output              : directory to store output files
├── renv                : renv files for dependencies
├── renv.lock           : describes the state of project's library
└── src                 : directory of Rmd and knitted html files

Knitted Rmarkdown can be rendered at:

• mapping.html
• generate-humboldt-ext.html

Getting started

This project uses renv to manage the virtual environment. If dependencies are not automatically installed by renv when you open humboldt.Rproj, please try the following command.

renv::restore()