RNACocktail release 0.3.2

This release contains the following changes:

• Some Bug fixes for differential analysis when there are more than 2 conditions. The output diff files will be pairwise comparison of the input conditions. For example for 3 conditions:

deseq2_res_sample0_vs_sample1.tab  
deseq2_res_sample0_vs_sample2.tab
deseq2_res_sample1_vs_sample2.tab

RNACocktail release 0.3.1

This release contains the following changes:

• Some Bug fixes.
• Updated FusionCatcher to 1.20
• Updated docker file and docker test script
• New docker image

RNACocktail release 0.3.0

This release contains the following changes:

• Some Bug fixes.
• Updated all the tools to the latest versions, namely:
  • StringTie 2.0.4
  • Salmon 0.11.0
  • R 3.6.1
  • featureCounts 2.0.0
  • LoRDEC 0.9
  • STAR 2.7.0f
  • GATK 4.1.4.0
  • FusionCatcher 1.10
• Updated docker file and docker test script.
• New docker image

RNACocktail release 0.2.2

This release contains the following changes:

• Several Bug fixes.
• Updated docker file to reflect new bug-fixes in the code. When necessary some packages are also fixed.
• Fixed the docker test script to work on GRCh38 on the new docker image.
• Added some example ref files for GRCh38.

RNACocktail release 0.2.1

This release contains the following changes:

• The license is updated to Apache2

RNACocktail release 0.2

This release contains the following additions:

• The all mode to run_rnacocktail.py to perform the most comprehensive analysis given the input data. This will run the appropriate steps for RNA-Seq data analysis from alignment to differential expression.
• A Docker build file to create an image for RNACocktail. The image contains all the supported packages as well as their dependencies.
• Extensive examples on running as well as analysis scripts.
• Updated the RNACocktail webpage.

RNACocktail release 0.1

Initial release of RNACocktail.