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PPI_RDF

Provide data file from one or more sources in PSI-MI format. If no data files, only schema will output.

positional arguments:

outfile provide output filename (i.e. out.nt)

optional arguments:

--help, -h show this help message and exit

--biogrid DATAFILE import biogrid MITAB data

--intact DATAFILE uniprot2entrez.txt must exist in path

--genenames Entrez2Gene.txt import genenames from entrez ids

--homologene homologene.data add homologene relation between interactors

--psd psd_genes.txt adds psd triples to postsynaptic density entrez ids

--filter genes.txt filters data to entrez ids in newline delimited file

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  • Python 100.0%