Updating documentation and example #232
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| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| #pull_request: | |
| # branches: | |
| # - master | |
| #schedule: | |
| # * is a special character in YAML so we have to quote this string | |
| # 3am Pacific = 11am UTC | |
| # https://crontab.guru is your friend | |
| # - cron: '0 17 * * *' | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| # RSPM: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| # vsni_LICENSE: ${{ secrets.vsni_LICENSE }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr, any::xml2, asreml=?ignore-before-r=5.0.0 | |
| needs: coverage | |
| # - name: Create and populate .Renviron file | |
| # run: echo vsni_LICENSE="vsni_LICENSE" >> ~/.Renviron | |
| # - name: Licence ASreml | |
| # run: | | |
| # remotes::install_github("") | |
| # biometryassist::install_asreml() | |
| # shell: Rscript {0} | |
| - name: Test coverage | |
| run: | | |
| cov <- covr::package_coverage( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | |
| ) | |
| covr::to_cobertura(cov) | |
| shell: Rscript {0} | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} | |
| file: ./cobertura.xml | |
| plugin: noop | |
| disable_search: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |