deploy: af3fe87

Instructions.html

@@ -365,30 +365,26 @@ <h2>Opening the Nextflow environment<a class="headerlink" href="#opening-the-nex
 <p>Click on button <strong>Code</strong> and click on the Codespaces tab. There click on <strong>Create codespace</strong>. Now your Nextflow environment will be built following the instructions in devcontainer.json file (i.e. installing Ubuntu, Docker, VSCode with Docker extension) with additional customization added in the Dockerfile (i.e, installing java and Docker dependencies).</p>
 <p>To learn more about Github codespaces go <a class="reference external" href="https://github.com/features/codespaces" rel="noopener noreferrer" target="_blank">here</a></p>
 <p>Now, Nextflow should be ready to run in your GitHub Codespace environment! Let’s check that you have a fully functional environment.</p>
-<div class="literal-block-wrapper docutils container" id="id1">
-<div class="code-block-caption"><span class="caption-text">Verify java installation:</span><a class="headerlink" href="#id1" title="Link to this code">#</a></div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">java</span> <span class="o">-</span><span class="n">version</span>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>:caption:<span class="w"> </span>Verify<span class="w"> </span>java<span class="w"> </span>installation:
+
+java<span class="w"> </span>-version
 </pre></div>
 </div>
-</div>
-<div class="literal-block-wrapper docutils container" id="id2">
-<div class="code-block-caption"><span class="caption-text">Verify Nextflow installation:</span><a class="headerlink" href="#id2" title="Link to this code">#</a></div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">nextflow</span> <span class="o">-</span><span class="n">v</span>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>:caption:<span class="w"> </span>Verify<span class="w"> </span>Nextflow<span class="w"> </span>installation:
+
+nextflow<span class="w"> </span>-v
 </pre></div>
 </div>
-</div>
-<div class="literal-block-wrapper docutils container" id="id3">
-<div class="code-block-caption"><span class="caption-text">Nextflow information:</span><a class="headerlink" href="#id3" title="Link to this code">#</a></div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">nextflow</span> <span class="n">info</span>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>:caption:<span class="w"> </span>Nextflow<span class="w"> </span>information:
+
+nextflow<span class="w"> </span>info
 </pre></div>
 </div>
-</div>
-<div class="literal-block-wrapper docutils container" id="id4">
-<div class="code-block-caption"><span class="caption-text">Verify Docker installation:</span><a class="headerlink" href="#id4" title="Link to this code">#</a></div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">docker</span> <span class="o">--</span><span class="n">version</span>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>:caption:<span class="w"> </span>Verify<span class="w"> </span>Docker<span class="w"> </span>installation:
+
+docker<span class="w"> </span>--version
 </pre></div>
 </div>
-</div>
 </section>
 </section>
 

_sources/Instructions.md

@@ -9,26 +9,26 @@ To learn more about Github codespaces go [here](https://github.com/features/code
 
 Now, Nextflow should be ready to run in your GitHub Codespace environment! Let's check that you have a fully functional environment.
 
-````{code-block}
+```bash
 :caption: Verify java installation:
 
 java -version
-````
+```
 
-````{code-block}
+```bash
 :caption: Verify Nextflow installation:
 
 nextflow -v
-````
+```
 
-````{code-block}
+```bash
 :caption: Nextflow information:
 
 nextflow info
-````
+```
 
-````{code-block}
+```bash
 :caption: Verify Docker installation:
 
 docker --version
-````
+```