fix: allow matching nan values in annotations (e.g. when b_factors are set to nan)
#657
Croydon-Brixtontest_and_deploy.yml
on: pull_request
Build CCD and wheel for reusing it in several CI jobs
4m 58s
Generate wheels matrix
9s
Check code style
10s
Build source distribution
26s
Test interfaces to databases and applications
3m 39s
Test interface to Muscle 5
58s
Matrix: Build & Test
Upload documentation to GitHub Releases and documentation website
0s
Upload package to GitHub Releases & PyPI
0s
Annotations
18 errors and 16 warnings
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Test interfaces to databases and applications
Process completed with exit code 1.
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Build & Test (cp311-win_amd64, windows-latest)
Command pytest D:\a\biotite\biotite --durations=50 --ignore=D:\a\biotite\biotite//tests//sequence//align//test_statistics.py --ignore=D:\a\biotite\biotite//tests//application --ignore=D:\a\biotite\biotite//tests//database --ignore=D:\a\biotite\biotite//tests//test_doctest.py --ignore=D:\a\biotite\biotite//tests//test_modname.py
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Build & Test (cp311-win_amd64, windows-latest)
Process completed with exit code 1.
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Build & Test (cp312-macosx_arm64, macos-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp312-macosx_x86_64, macos-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp313-macosx_x86_64, macos-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp313-macosx_arm64, macos-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp312-win_amd64, windows-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp310-win_amd64, windows-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp313-win_amd64, windows-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp311-macosx_x86_64, macos-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp311-macosx_arm64, macos-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp310-macosx_x86_64, macos-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp310-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp310-macosx_arm64, macos-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-win_amd64_windows-l" failed.
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Generate wheels matrix
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Check code style
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build CCD and wheel for reusing it in several CI jobs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build source distribution
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interfaces to databases and applications
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interfaces to databases and applications
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Test interfaces to databases and applications
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead.
action(self, namespace, argument_values, option_string)
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Test interface to Muscle 5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interface to Muscle 5
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Upload CCD to GitHub Releases
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build documentation
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build documentation
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Build documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Build documentation
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead.
action(self, namespace, argument_values, option_string)
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Run benchmarks
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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ccd
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33 MB |
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documentation
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74.2 MB |
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internal-build
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51.1 MB |
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release-sdist
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33.5 MB |
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